PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G32220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 33971 Da PI: 5.8711 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 143 | 192 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr + +g+WvAeIr p++ r+r++lg+++++e+Aa+a +aa +l+g OMERI03G32220.1 143 KYRGVRLRQ-WGKWVAEIRLPNS---RRRIWLGSYDSPEKAARAFDAAFICLRG 192 8*****998.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-26 | 142 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-19 | 143 | 203 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.207 | 143 | 202 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 143 | 192 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.08E-25 | 143 | 204 | No hit | No description |
SMART | SM00380 | 8.3E-32 | 143 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 144 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 166 | 182 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MARTHPKGAE GEVAAASDPA RVTWAPPCGR VELRPPRADT DRRCTAAVAT ITDAAPPLDL 60 AEGAEGEVAA VSDPARATWA PPSSRVELRP PRADADPPQP CRRRPPRRKT EEGGGRQIGA 120 SSSARRPRAL MANGTSPAPV ERKYRGVRLR QWGKWVAEIR LPNSRRRIWL GSYDSPEKAA 180 RAFDAAFICL RGGEAIAGLN FPESPPAVVS CTSDPQEVLA YATSHANRLS SDPTIAQEKE 240 ALVMEETAEQ FSDVVRANAA PLPPPMPPPV QVAGGSFDWS QLPLYSPMTT PTAEHWEEDN 300 VEATTSDNLW SFDF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0D775 | 0.0 | A0A0E0D775_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G06220.1 | 1e-98 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 8e-32 | ERF family protein |