PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G31620.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 551aa    MW: 63300.5 Da    PI: 9.4827
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G31620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.12.7e-191042234
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdae 34
                     rienk+ rqvtf+kRrng+lKKA+ELS+LCdae
  OMERI03G31620.1 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAE 42
                     9******************************97 PP
2SRF-TF86.21.9e-2770119251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
  OMERI03G31620.1  70 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 119
                      9***********************************************96 PP
3SRF-TF94.93.6e-30314364151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  OMERI03G31620.1 314 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 364
                      79***********************************************86 PP
4K-box90.23.9e-301392345100
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +  + ++ ++++ +qe+ +Lk+ +e Lq++qR+llGedL +L  +eL+qLe+q+ + lk+iRs+K+++ll+++ +l++ke++lq++n+ L++kl
  OMERI03G31620.1 139 DAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKL 232
                      444567889************************************************************************************9 PP

            K-box  99 ee 100
                      +e
  OMERI03G31620.1 233 DE 234
                      86 PP
5K-box105.85.2e-35384478599
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         s+e+ ++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+l
  OMERI03G31620.1 384 VLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKEL 477
                      55567778899********************************************************************************998 PP

            K-box  99 e 99 
                       
  OMERI03G31620.1 478 V 478
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.408142IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-18157IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-18142IPR002100Transcription factor, MADS-box
CDDcd001201.40E-20242No hitNo description
PfamPF003191.3E-161042IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.0261121IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-3661120IPR002100Transcription factor, MADS-box
CDDcd002652.09E-3762139No hitNo description
SuperFamilySSF554553.53E-3062143IPR002100Transcription factor, MADS-box
PROSITE patternPS00350063117IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-286383IPR002100Transcription factor, MADS-box
PfamPF003193.7E-2570117IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-288398IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-2898119IPR002100Transcription factor, MADS-box
PfamPF014864.2E-26145232IPR002487Transcription factor, K-box
PROSITE profilePS5129714.723148238IPR002487Transcription factor, K-box
SuperFamilySSF554551.19E-30311391IPR002100Transcription factor, MADS-box
CDDcd002652.68E-35312381No hitNo description
SMARTSM004321.4E-30312365IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.034313366IPR002100Transcription factor, MADS-box
PfamPF003195.3E-25315362IPR002100Transcription factor, MADS-box
PfamPF014865.5E-30389477IPR002487Transcription factor, K-box
PROSITE profilePS5129717.855393483IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AERERERKGR LKRDLEREIE  60
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS  120
SNMLKTLERY QRYIYASQDA AAPTSDEMQN NYQEYVNLKA HVEILQQSQR NLLGEDLAPL  180
ATNELEQLES QVVRTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEIDVEAA  240
PPQPPWNGNC SNGQGGSGVF SSEPPQPEHF FQALGLHAVD VNQPPAPPPG EVPLSFLFKF  300
VAKCLPNFFQ CNLKRIENKI NRQVTFSKRR SGLLKKANEI SVLCDAEVAL IIFSTKGKLY  360
EYATDSCMDK ILERYERYSY AEKVLISAES DTQGNWCHEY RKLKAKVETI QKCQKHLMGE  420
DLESLNLKEL QQLEQQLENS LKHIRSRKSQ LMLESINELQ RKEKSLQEEN KVLQKELVEK  480
QKVQKQQVQW DQTQPQTSSS SSSFMMREAL PTTNISNYPA AAGERIEDVA AGQPQHVRIG  540
LPPWMLSHIN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-2015347922103Developmental protein SEPALLATA 3
4ox0_B8e-2015347922103Developmental protein SEPALLATA 3
4ox0_C8e-2015347922103Developmental protein SEPALLATA 3
4ox0_D8e-2015347922103Developmental protein SEPALLATA 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14653RKGRLKRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033240.0AB003324.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:E31254.
GenBankAY5519220.0AY551922.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS217 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631034.11e-148MADS-box transcription factor 14 isoform X2
SwissprotQ10CQ11e-149MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLA0A0E0D6X60.0A0A0E0D6X6_9ORYZ; Uncharacterized protein
STRINGOGLUM03G34160.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136182630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]