PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G30900.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 450aa    MW: 49441.3 Da    PI: 7.5406
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G30900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  OMERI03G30900.1  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                     ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-11545No hitNo description
CDDcd002025.57E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
PfamPF003202.6E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-12741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR  60
ASKLKPPTLK LKEQKQPKKN PSHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC  120
APYGTADASE MTASAQSHAW ESLVPSKRRS CVARPKPSQM EKLAKDLNSI MHEEQLLYLS  180
GSSEEDLIYH SATPVDSFEM GYGSMLLRPN SKSLEEESEA SSIPADNKSY ITSESYSGSV  240
SFVYSESKAT SNQNVITEQP KKFLVQTSDN ARRANLHTEN QDTLENANSP LVSLHMEGKD  300
SEETRVKTSA SNRLTKSTMN PLKRPHDTHF QSSVELRGTM RSPKRVFKYG DAMGLKCQVS  360
FMPKPGNGKD LACSDRALNL FMLPPDKLSM LVPPQYANNE SDQDLLLDVP LNARHPEAEL  420
LCQPSQLSSV AHSSTSEGGN AGGEGRLKQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0707290.0AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880746.10.0uncharacterized protein LOC4336558
TrEMBLA0A0E0D6N20.0A0A0E0D6N2_9ORYZ; Uncharacterized protein
STRINGOMERI03G30120.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-60GATA transcription factor 26