PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G30340.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 380aa    MW: 40394.4 Da    PI: 9.6898
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G30340.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.88.8e-22245307163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkre+rkq+NRe+ArrsR+RK+ae+e L++ v++L+aeN++L++e+++l++ ++kl+ e+
  OMERI03G30340.2 245 ERELKREKRKQSNRESARRSRLRKQAETEDLATQVESLTAENTSLRSEISRLSESSEKLRLEN 307
                      89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.8E-31193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1706.4E-17242304No hitNo description
SMARTSM003388.4E-22245309IPR004827Basic-leucine zipper domain
PfamPF001702.8E-20245307IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.196247310IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.94E-11248303No hitNo description
CDDcd147021.18E-22250298No hitNo description
PROSITE patternPS000360252267IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAHDEAVATQ KTGKTTSPPK DQPTPCPFPD WSAVQAYYGP GVLPPTYFAP AIAPGHAPPP  60
YMWGPQPIMP PPFGTPYAAM YPHGGAYPHP LMPMMANPLS MEPAKSASSK EKGSNKKLKE  120
VDGAAVSTGS GDSKKTMTSS GDYSAEGSSD VNDLKVGKTG RKRRLDDGAG AETSAAAKME  180
NALPPSHILG STAVLPNHSF PAQVIRPSAT NVANSRALGT PISPPPGVIV PSHTGVSTEL  240
LIKDERELKR EKRKQSNRES ARRSRLRKQA ETEDLATQVE SLTAENTSLR SEISRLSESS  300
EKLRLENSAL MGKLKDPAAS TQAETSLQKT TTASSPRVVE NFLSMIDNTN KTSVRHTEHA  360
EPKLRQLLGS SPATDAVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261267RRSRLRK
2261268RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654400.0AK065440.1 Oryza sativa Japonica Group cDNA clone:J013020K21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640745.10.0common plant regulatory factor 1
TrEMBLA0A0E0D6G90.0A0A0E0D6G9_9ORYZ; Uncharacterized protein
STRINGOMERI03G29550.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-38G-box binding factor 3