PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G30000.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 514aa    MW: 54133.6 Da    PI: 7.0943
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G30000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.77.2e-0772108237
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 
                      ++R+++ +eq+++Le  F++   +p ++e++++  +l
  OMERI03G30000.1  72 KPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQL 108
                      89*****************99***********98887 PP
2Wus_type_Homeobox70.23.6e-2371127264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG+++d+N      Nrk+R ++k
    OMERI03G30000.1  71 AKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDAN------NRKSRTKNK 127
                        689********************************************9......999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.7E-472108IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MASPNRHWPS MFRSNLACNI QQQQQQPDMN GNGGSSSSSF LLSPPAAATT GNGKPSLLSS  60
GCEEGTRNPE AKPRWNPRPE QIRILEGIFN SGMVNPPRDE IRRIRLQLQE YGQVGDANNR  120
KSRTKNKLRA AGHHHHHGGA DARGRAAALP RASAPPSTNI VLPSAAAAAP LTPPRRHLLA  180
ATSSSSSSSD RSSGSSKSVK PAAALLTSAA IDLFSPAPAP TTQLPACQLY YHSHPTPLAR  240
DDQLITSPES SSLLLQWPAS QYMPATELGG VLGSSSHTQT PAAITTHPSI SPTVLLGLCN  300
EALGQHQQET MDDMMITCSN ASKVFNHHSL DMSCTDAVSA VIRDDEKARL GLLHYGIGVT  360
AAANPAHHHH HHHHLASPVH DAVSAADAST AAMILPFNTT AAATPSNVVA TSSALIADQL  420
QGLLDAGLLQ GGAAPPPPSA TVVAVSRDDE TMCTKTTSYS FPATMHLNVR MFGEAAVLVR  480
YSGEPVLVDD SGVTVEPLQQ GATYYVLVTE EGVH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241430.0AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881188.10.0WUSCHEL-related homeobox 12
SwissprotA3B6V00.0WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLA0A0E0D6B80.0A0A0E0D6B8_9ORYZ; Uncharacterized protein
STRINGOGLUM05G27500.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-35homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]