PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G29350.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 362aa    MW: 38451.3 Da    PI: 5.7583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G29350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12183230355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  OMERI03G29350.1 183 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 230
                      67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.025180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18183248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-13185234No hitNo description
SMARTSM003536.1E-15186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEVDAAAAA AMVQQQQQYG  60
AAAAAGEHRP RKAAKVNTSW DSCITEQGSP ADSSSPTILS FGGHADAAAA AAFASAGQAQ  120
SAPYYGGASA AALKPKQELD AAAAPFSQAR PVKRSYDAMV AADVAKAPTT AAAAASRPAS  180
QNQEHILAER KRREKLSQRF IALSKIVPGL KKMDKASVLG DAIKYVKQLQ DQVKGLEEEA  240
RRRPVEAAVL VKKSQLSADD DDGSSCDENF DGSEATAGLP EIEARVSERT VLVKIHCENR  300
KGALITALSE VETIGLTIMN TNVLPFTSSS LDITIMATAG ENFSLSVKDI VKKLSQAFKL  360
SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12185239963Transcription factor MYC2
5gnj_B2e-12185239963Transcription factor MYC2
5gnj_E2e-12185239963Transcription factor MYC2
5gnj_F2e-12185239963Transcription factor MYC2
5gnj_G2e-12185239963Transcription factor MYC2
5gnj_I2e-12185239963Transcription factor MYC2
5gnj_M2e-12185239963Transcription factor MYC2
5gnj_N2e-12185239963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193ERKRRE
2189194RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205390.0AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627848.10.0transcription factor bHLH18
RefseqXP_015627849.10.0transcription factor bHLH18
TrEMBLA0A0E0D5Z00.0A0A0E0D5Z0_9ORYZ; Uncharacterized protein
STRINGOMERI03G28390.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.24e-47bHLH family protein