PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G27910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 335aa MW: 35186.6 Da PI: 6.8514 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 158.3 | 4.3e-49 | 58 | 219 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++ +++s c e++sss s++ ++++ OMERI03G27910.1 58 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQHsnpad 149 589**************************************************************..666678877777777774444455788 PP TCP 89 ......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +++aa++k++++ a+++ ++kesrakar+rarert+ek+r+++++ OMERI03G27910.1 150 hgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 219 899999999999*********77777777**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-45 | 60 | 215 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.132 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.264 | 195 | 212 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MHPFMDLELE PHAQQLAAAE EEDGAGGNEY GGGQGVDAGV PFGVDGAAAA AAAAAAAAAA 60 RKDRHSKIST AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN MSKAAIREIM 120 SDDASSVCEE DGSSSLSVDG KQQHSNPADH GGGAGDHKGA AHGHSDGKKP AKPRRAAANP 180 KPPRRLANAH PVPDKESRAK ARERARERTK EKNRMRWVTL ASAISVEAAT AAAAAAAGED 240 KSPTSPSNNL NHSSSTNLVS TELEDGSSST RHNGVGVSGG RMQEISAASE ASDVIMAFAN 300 AGAYDDSGSY YLQQQHQQDQ WELGGVVFAN SRHYC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB491556 | 0.0 | AB491556.1 Oryza rufipogon tb1 gene for teosinte branched 1, complete cds, strain: W1294. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630237.1 | 0.0 | transcription factor TB1-like | ||||
Swissprot | Q8LN68 | 0.0 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A0E0D5E9 | 0.0 | A0A0E0D5E9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G27040.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-23 | TCP domain protein 12 |