PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G27480.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 516aa MW: 56193 Da PI: 8.9337

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G27480.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.4e-11	182	208	7	33
HHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLee 33 rr+++NReAAr+sR+RKka+i++Le OMERI03G27480.4 182 MRRLAQNREAARKSRLRKKAYIQQLES 208 69***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-7	174	222	No hit	No description
SMART	SM00338	1.8E-5	175	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	178	222	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.06E-6	180	216	No hit	No description
Pfam	PF00170	1.5E-7	181	209	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-29	260	334	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MGEARRGQNP HHVLGYGFHG TTLPNSMTSA NLFEQGGGGG GGADYFGELE EALVHQVATL 60 RRRAQQTATT TTSHHGHTTP FSTAAAAATA TARPPATLDI FPSWPMRSSL PTPKDGCSNV 120 TADTTDSESS SKNNGDQGAA AADMASQFDQ IPQQQQKQHK KMAASSTHSD HRMTKTLDPK 180 IMRRLAQNRE AARKSRLRKK AYIQQLESSK LRLAQMEQDL ERARSQGLLL GGSPGGNTSA 240 GAAMFDAEYG RWLEDGGRRM AELHGGLHAH LPDGDLRAIV DDALAHYDEL FRLRAAAAKA 300 DVFHLITGTW ATPAERCFLW MAGFRPSDLL KTVAPRLDPL TEQQVVGICS LQQSSQQAEE 360 ALSQGLEQLH QSLAETVANG GSVVDEASLG SFMGYMALAL GKLSNLEGFV IQADNLRQQT 420 LHQMHRILTI RQAARCFLAI GEYHNRLRAL SSLWASHPRD GFLQQNGEKQ KYLTVEALGA 480 GDAATGQRWT GTPLEEALTR GMGDGRRRRR QGQRRC

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MGEARRGQNP HHVLGYGFHG TTLPNSMTSA NLFEQGGGGG GGADYFGELE EALVHQVATL  60
RRRAQQTATT TTSHHGHTTP FSTAAAAATA TARPPATLDI FPSWPMRSSL PTPKDGCSNV  120
TADTTDSESS SKNNGDQGAA AADMASQFDQ IPQQQQKQHK KMAASSTHSD HRMTKTLDPK  180
IMRRLAQNRE AARKSRLRKK AYIQQLESSK LRLAQMEQDL ERARSQGLLL GGSPGGNTSA  240
GAAMFDAEYG RWLEDGGRRM AELHGGLHAH LPDGDLRAIV DDALAHYDEL FRLRAAAAKA  300
DVFHLITGTW ATPAERCFLW MAGFRPSDLL KTVAPRLDPL TEQQVVGICS LQQSSQQAEE  360
ALSQGLEQLH QSLAETVANG GSVVDEASLG SFMGYMALAL GKLSNLEGFV IQADNLRQQT  420
LHQMHRILTI RQAARCFLAI GEYHNRLRAL SSLWASHPRD GFLQQNGEKQ KYLTVEALGA  480
GDAATGQRWT GTPLEEALTR GMGDGRRRRR QGQRRC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101620	0.0	AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBank	FJ750929	0.0	FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619722.1	0.0	transcription factor TGAL11
Swissprot	Q2QXL0	0.0	TGL11_ORYSJ; Transcription factor TGAL11
TrEMBL	A0A0E0D594	0.0	A0A0E0D594_9ORYZ; Uncharacterized protein
STRING	OPUNC12G03020.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-123	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]