PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G27480.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 459aa    MW: 49677.6 Da    PI: 6.8718
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G27480.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.6e-11155181733
                      HHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   7 errkqkNReAArrsRqRKkaeieeLee 33 
                       rr+++NReAAr+sR+RKka+i++Le 
  OMERI03G27480.2 155 MRRLAQNREAARKSRLRKKAYIQQLES 181
                      69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-7147195No hitNo description
SMARTSM003381.8E-5148224IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128151195IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-7153189No hitNo description
PfamPF001701.3E-7154182IPR004827Basic-leucine zipper domain
PROSITE patternPS000360156171IPR004827Basic-leucine zipper domain
PfamPF141441.3E-29233307IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MPQTGSEQGG GGGGGADYFG ELEEALVHQV ATLRRRAQQT ATTTTSHHGH TTPFSTAAAA  60
ATATARPPAT LDIFPSWPMR SSLPTPKDGC SNVTADTTDS ESSSKNNGDQ GAAAADMASQ  120
FDQIPQQQQK QHKKMAASST HSDHRMTKTL DPKIMRRLAQ NREAARKSRL RKKAYIQQLE  180
SSKLRLAQME QDLERARSQG LLLGGSPGGN TSAGAAMFDA EYGRWLEDGG RRMAELHGGL  240
HAHLPDGDLR AIVDDALAHY DELFRLRAAA AKADVFHLIT GTWATPAERC FLWMAGFRPS  300
DLLKTVAPRL DPLTEQQVVG ICSLQQSSQQ AEEALSQGLE QLHQSLAETV ANGGSVVDEA  360
SLGSFMGYMA LALGKLSNLE GFVIQADNLR QQTLHQMHRI LTIRQAARCF LAIGEYHNRL  420
RALSSLWASH PREILVADEG NCGELSIAAQ PSESQFSAF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016200.0AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBankFJ7509290.0FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619722.10.0transcription factor TGAL11
SwissprotQ2QXL00.0TGL11_ORYSJ; Transcription factor TGAL11
TrEMBLA0A0E0D5920.0A0A0E0D592_9ORYZ; Uncharacterized protein
STRINGOPUNC12G03020.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-129bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]