PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G27480.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 545aa MW: 59841.3 Da PI: 9.3246

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G27480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9e-11	215	241	7	33
HHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLee 33 rr+++NReAAr+sR+RKka+i++Le OMERI03G27480.1 215 MRRLAQNREAARKSRLRKKAYIQQLES 241 69***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.2E-7	207	255	No hit	No description
SMART	SM00338	1.8E-5	208	284	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	211	255	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	213	249	No hit	No description
Pfam	PF00170	1.6E-7	214	242	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	216	231	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-29	293	367	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MEKPLKGRSK KFELALRSDS WRYWEIELWF CGSMGEARRG QNPHHVLGYG FHGTTLPNSM 60 TSANLFEQGG GGGGGADYFG ELEEALVHQV ATLRRRAQQT ATTTTSHHGH TTPFSTAAAA 120 ATATARPPAT LDIFPSWPMR SSLPTPKDGC SNVTADTTDS ESSSKNNGDQ GAAAADMASQ 180 FDQIPQQQQK QHKKMAASST HSDHRMTKTL DPKIMRRLAQ NREAARKSRL RKKAYIQQLE 240 SSKLRLAQME QDLERARSQG LLLGGSPGGN TSAGAAMFDA EYGRWLEDGG RRMAELHGGL 300 HAHLPDGDLR AIVDDALAHY DELFRLRAAA AKADVFHLIT GTWATPAERC FLWMAGFRPS 360 DLLKTVAPRL DPLTEQQVVG ICSLQQSSQQ AEEALSQGLE QLHQSLAETV ANGGSVVDEA 420 SLGSFMGYMA LALGKLSNLE GFVIQADNLR QQTLHQMHRI LTIRQAARCF LAIGEYHNRL 480 RALSSLWASH PRESQLTKFK YLTVEALGAG DAATGQRWTG TPLEEALTRG MGDGRRRRRQ 540 GQRRC

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MEKPLKGRSK KFELALRSDS WRYWEIELWF CGSMGEARRG QNPHHVLGYG FHGTTLPNSM  60
TSANLFEQGG GGGGGADYFG ELEEALVHQV ATLRRRAQQT ATTTTSHHGH TTPFSTAAAA  120
ATATARPPAT LDIFPSWPMR SSLPTPKDGC SNVTADTTDS ESSSKNNGDQ GAAAADMASQ  180
FDQIPQQQQK QHKKMAASST HSDHRMTKTL DPKIMRRLAQ NREAARKSRL RKKAYIQQLE  240
SSKLRLAQME QDLERARSQG LLLGGSPGGN TSAGAAMFDA EYGRWLEDGG RRMAELHGGL  300
HAHLPDGDLR AIVDDALAHY DELFRLRAAA AKADVFHLIT GTWATPAERC FLWMAGFRPS  360
DLLKTVAPRL DPLTEQQVVG ICSLQQSSQQ AEEALSQGLE QLHQSLAETV ANGGSVVDEA  420
SLGSFMGYMA LALGKLSNLE GFVIQADNLR QQTLHQMHRI LTIRQAARCF LAIGEYHNRL  480
RALSSLWASH PRESQLTKFK YLTVEALGAG DAATGQRWTG TPLEEALTRG MGDGRRRRRQ  540
GQRRC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101620	0.0	AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBank	FJ750929	0.0	FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619722.1	0.0	transcription factor TGAL11
Swissprot	Q2QXL0	0.0	TGL11_ORYSJ; Transcription factor TGAL11
TrEMBL	A0A0E0D591	0.0	A0A0E0D591_9ORYZ; Uncharacterized protein
STRING	OPUNC12G03020.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-123	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]