PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G26770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 258aa MW: 27936 Da PI: 9.3938 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.1 | 6.2e-33 | 162 | 218 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF OMERI03G26770.1 162 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGTGGRF 218 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.7E-37 | 160 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.032 | 161 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-28 | 163 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.5E-25 | 164 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 166 | 186 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.5E-25 | 195 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MESRPGGTNL VEPRGQGALP SGIPIQQPWW TTSAGVGAVS PAVVAPGSGA GISLSGRDGG 60 GDDAAEESSD DSRRSGETKD GSTGQEKHHA TSQMTALASD YLTPFSQLEL NQPIASAAYQ 120 YPDSYYMGMV GPYGPQAMSA QTHFQLPGLT HSRMPLPLEI SEEPVYVNAK QYHGILRRRQ 180 SRAKAELEKK VVKARKPYLH ESRHQHAMRR ARGTGGRFLN TKKNEDGAPS EKADPNKGEQ 240 NSGYRRIAPD LQLLQKET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 162 | 225 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288030 | 0.0 | AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK069854 | 0.0 | AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence. | |||
GenBank | EU847012 | 0.0 | EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632634.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632635.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632636.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632637.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
TrEMBL | A0A0E0D4Y2 | 0.0 | A0A0E0D4Y2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0D4Y4 | 0.0 | A0A0E0D4Y4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G25970.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 4e-32 | nuclear factor Y, subunit A7 |