PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G26460.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 830aa    MW: 92550.5 Da    PI: 7.4327
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G26460.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.73.2e-1194558261374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d + a++lL++++++a p+gd  qRla +f+ +L+arla+++s+ly++l +++t+    s+ l+a++l+  ++P+ ++s
  OMERI03G26460.3 455 LRTLLIHCAQAVAADDRRTANELLKQIRQHAKPNGDGSQRLAYCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLS 545
                      6789************************************************************999999...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L +R++gpp+lRiTg++ p++g   +e++eetg+rLa++Ae++gvpfe++  +a+++
  OMERI03G26460.3 546 HFLSNQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLFKREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAEYAEKIGVPFEYQG-IASKW 638
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+le+++pr++ 
  OMERI03G26460.3 639 ETIRVEDLNIKKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDA 732
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++ +ak  ++ ++ + + ++e+sg+l++gWk+r ++++S W+
  OMERI03G26460.3 733 QRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVLKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 826
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.06429806IPR005202Transcription factor GRAS
PfamPF035141.1E-116455826IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MTKMPSSPYS LSLSFSLLPS LFPVFLNRCS CTPPPPPPPL LDPHAPPSPI RSSSREAPEP  60
HRGGGGFAGE KAPGSRWATA GGKVSEGSDT ALRPNRRLSM GLDNNFGELS GMFCGLSYDG  120
YTDHGSQSDY FRFADPQPAI VPQMDAGPSS AASSTVSRAA VSSGTDNPED WEFISDESLN  180
YISRMLMEED IDEKVSMYQE ESAALRAAAK PFYDILGHKF PPSPDHQLVA WPLDSPSESS  240
TSSYPHSLAS SVTSSSISGA VDSIQRHYVG HSEYRSLSGH SSQPPVGPSS DVRNAMETLE  300
DPLISNGRIP EYLFESFPTW DFRRGVDETQ KFLPGSDKVV IDLEAGGVAK RQEAGKAISL  360
NGSKAEVLKV KKNRQSEDLD VMEGRNSKQS AFCSDEPDWI EMFDVLLRQT EKKATDLREM  420
MRFEASKNSQ VAQPKGPSGT RSRGRKPTKK DVVDLRTLLI HCAQAVAADD RRTANELLKQ  480
IRQHAKPNGD GSQRLAYCFA DGLEARLAGT GSQLYHKLVA KRTTASDMLK AYHLYLAACP  540
FKRLSHFLSN QTILSLTKNA SKVHIIDFGI YFGFQWPCLI RRLFKREGGP PKLRITGIDV  600
PQPGFRPTER IEETGQRLAE YAEKIGVPFE YQGIASKWET IRVEDLNIKK DEVVIVNCLY  660
RFRNLIDETV AVDSPRNRVL NTIRQVNPAI FIHGIVNGSY SVPFFITRFR EALFHFSALF  720
DMLETTVPRD DAQRALIERD LFGREALNVI ACEGSDRVER PETYKQWQVR NLRAGFVQSP  780
LNQDIVLKAK DKVKDIYHKD FVIDEDSGWL LQGWKGRIIY AISTWKPNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-514598268375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972770.0AC097277.6 Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence.
GenBankAK1014020.0AK101402.1 Oryza sativa Japonica Group cDNA clone:J033037F15, full insert sequence.
GenBankAK1018480.0AK101848.1 Oryza sativa Japonica Group cDNA clone:J033069K04, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630936.10.0scarecrow-like protein 9
RefseqXP_015630937.10.0scarecrow-like protein 9
RefseqXP_015630938.10.0scarecrow-like protein 9
RefseqXP_015630939.10.0scarecrow-like protein 9
RefseqXP_015630940.10.0scarecrow-like protein 9
RefseqXP_015630941.10.0scarecrow-like protein 9
RefseqXP_015630942.10.0scarecrow-like protein 9
RefseqXP_015630943.10.0scarecrow-like protein 9
RefseqXP_015630944.10.0scarecrow-like protein 9
RefseqXP_025880243.10.0scarecrow-like protein 9
RefseqXP_025880244.10.0scarecrow-like protein 9
RefseqXP_025880245.10.0scarecrow-like protein 9
TrEMBLA0A0E0D4S50.0A0A0E0D4S5_9ORYZ; Uncharacterized protein
STRINGOMERI03G25690.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein