PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G26130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 329aa    MW: 35003.5 Da    PI: 4.1408
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G26130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.7e-17225261135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  OMERI03G26130.1 225 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 261
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.8E-1084119IPR010399Tify domain
PROSITE profilePS5132014.69884119IPR010399Tify domain
PfamPF062002.4E-1287118IPR010399Tify domain
PROSITE profilePS5101713.364153195IPR010402CCT domain
PfamPF062031.3E-14153193IPR010402CCT domain
PROSITE profilePS501148.524219278IPR000679Zinc finger, GATA-type
SMARTSM004019.7E-9219272IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-11223269No hitNo description
CDDcd002021.39E-16224279No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13224264IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003202.3E-14225261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPDAAAAATA AQDADAVMRD APADAAAGGG GGDGDDDDDG DDGTEEDDEE EEDDDDVDDE  60
EGEEEEPPAA TEDPAAPEPV SALLPGSPNQ LTLLFQGEVY VFESVTPEKV QAVLLLLGSS  120
EMPPGLANMV LPNQRENRGY DDLLQRTDIP AKRVASLIRF REKRKERNFD KKIRYAVRKE  180
VALRMQRRKG QFAGRANMEG ESLSPGCELA SQGSGQDFLS RESKCQNCGT SEKMTPAMRR  240
GPAGPRTLCN ACGLMWANKG TLRNCPKAKV ESSVVATEQS NAAVSPSGID NKELVVLNPE  300
NITASHGEVM GDSTPANEAE IGAPKAPSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1050250.0AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628049.10.0GATA transcription factor 18
SwissprotQ10F250.0GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A0E0D4M80.0A0A0E0D4M8_9ORYZ; Uncharacterized protein
STRINGOMERI03G25330.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-67ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]