PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G25970.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 1042aa MW: 113696 Da PI: 6.3963 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.6 | 1e-08 | 408 | 445 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + OMERI03G25970.3 408 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 445 664559******************************88 PP | |||||||
2 | Homeobox | 23.2 | 1.2e-07 | 980 | 1012 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +e+ LA +gL+ +q+++WF N R + OMERI03G25970.3 980 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 1012 89*****************************88 PP | |||||||
3 | BELL | 119.3 | 1.7e-38 | 271 | 342 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi OMERI03G25970.3 271 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 342 689*******************************************************************98 PP | |||||||
4 | BELL | 56.9 | 5.1e-19 | 836 | 898 | 10 | 72 |
BELL 10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 akLlsll e++ r+++y +l+ v +sFe + g g+ + Yt l +a+SrhF +L+ ai ++ OMERI03G25970.3 836 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTVLMAQAMSRHFGSLRRAILRKL 898 8**********************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-56 | 195 | 340 | IPR006563 | POX domain |
Pfam | PF07526 | 4.9E-51 | 201 | 338 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.357 | 386 | 449 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-28 | 388 | 458 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-9 | 389 | 453 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.88E-12 | 389 | 450 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 390 | 455 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-17 | 406 | 445 | IPR008422 | Homeobox KN domain |
SMART | SM00574 | 1.8E-16 | 775 | 896 | IPR006563 | POX domain |
Pfam | PF07526 | 1.0E-19 | 781 | 894 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.175 | 953 | 1016 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-9 | 956 | 1020 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.71E-10 | 956 | 1017 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-25 | 961 | 1022 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.99E-16 | 962 | 1024 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.0E-16 | 973 | 1012 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1042 aa Download sequence Send to blast |
MRSTPSDMAT YYSSPGNERD SQAMYPADSG NSSYPVPSAI GNMLYPGNGS SGPYTEFSGI 60 IQHQQNFMEL PGHPTAISQD SSSREPNMVA SYTDQRSFGP AKDMRNEMLM HLMDGAHNAG 120 ADLIHNDTHS SAQIEFGLLN NHNSMSVTPA PGQGLSLSLN THILAPSYPY WSAKTELLTP 180 HSYQGDDNRM KNMQSEASQA IRNSKYLKAA QELLDEVVSV WKSIKQKAQK DQAEAGKSDN 240 KEAEGGSKGE GVSSNPQEST ANAAPEISAA EKQELQNKMA KLMAMLDEVD RKYKHYYHQM 300 QIVVSSFDMV AGSGAAKPYT AVALQTISKH FRCLKDAIND QINVIRKKLG EEESSSGKEG 360 KLTRLRYIDQ QLRQQRAFQQ YGLLQQNAWR PQRGLPENSV SILRAWLFEH FLHPYPKDSE 420 KLMLARQTGL TRSQISNWFI NARVRLWKPM IEDMYKEEIG EADLDSNSSS DNVPRSKDKI 480 ATSEDKEDLK SSMSQTYQPS QLGESKANIG MMSLGGAPAG FHNEGNQDDS FMNLMLKDQR 540 PGEAEGSLLH DAVAHHSDEN ARFMAYHLSG LGRYGNSNVS LTLGLQHPDS RLSVQNTHQP 600 GFAGAGEEIY NSTASLGVAA ASSSDYESTN QIDQRQRPCR CRSSCRIEAA VWLPRPRDWP 660 LAFFVRVNAP CCCHVGPGTM ASLWLSEDCK VRLTMVASKQ LHSQRCGGHY CQLHHHRPEE 720 IAGAGTESHR SDGSSGCGGA GPMVVLTLGS GAAAAEDDGG GRSRCSCGVG GAAPATMVSA 780 LRGSRYLLPA QELLREAVSA AAASARGGDD DDEAVASFPH DGKSTGIGGG GGGVQAKLLS 840 LLSELESRHE HYFGELRRVS ASFEPALGAG ATAGYTVLMA QAMSRHFGSL RRAILRKLRL 900 HAAAAARTRS ALLRLARDAM EEDDEGDGEE EEEEEVVNRV VRRTKQAAAA RAEQAWRPLR 960 GLPEDAVGVL RAWLFDHFLH PYPNDNEKLM LAVATGLSRT QISNWFINAR VRLWKPMVEE 1020 MYNDEFDDDD AGSGGGGASS SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 5e-17 | 395 | 1019 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-17 | 395 | 1019 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067939 | 0.0 | AK067939.1 Oryza sativa Japonica Group cDNA clone:J013124I05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631000.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_025879417.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A0E0D4K7 | 0.0 | A0A0E0D4K7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G25190.3 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-105 | BEL1-like homeodomain 6 |