PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G25120.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 216aa MW: 21900.2 Da PI: 4.1543 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 68.5 | 1.4e-21 | 74 | 130 | 16 | 81 |
TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS HSF_DNA-bind 16 keliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 +++isw+++g++fvv+ + efa+++Lpk+Fk +nf+SFvRQLn+YgF ++ ++ weF OMERI03G25120.3 74 DDIISWNDDGSTFVVWRPAEFARDLLPKFFKRNNFSSFVRQLNTYGFGNIVPDR---------WEF 130 79*********************************************9988776.........555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.2E-20 | 67 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.5E-23 | 73 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.89E-20 | 74 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-18 | 74 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-7 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-7 | 111 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDLELELQGG RCRETLVSEL GVRVGVAAEN GLAAVAGGRA GAGSPLRGVV LLSSSSEGGG 60 EELVSSNAGV FSGDDIISWN DDGSTFVVWR PAEFARDLLP KFFKRNNFSS FVRQLNTYGF 120 GNIVPDRWEF ANDASGEGNG GCSVTPPTPA TTTTGAVTVA AAIPMALPVT TRDGSQVLSG 180 EEQIISSSSS PEPLLMLSQT PSGSGSGSGG VASGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137991 | 1e-134 | AC137991.3 Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-134 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-134 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659656.1 | 2e-63 | PREDICTED: heat stress transcription factor B-2b-like | ||||
Swissprot | Q6Z9C8 | 1e-50 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A0E0D4A4 | 1e-150 | A0A0E0D4A4_9ORYZ; Uncharacterized protein | ||||
STRING | OB08G29340.1 | 6e-63 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 4e-33 | HSF family protein |
Publications ? help Back to Top | |||
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