PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G24390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 186aa    MW: 19492.6 Da    PI: 8.4346
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G24390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.2e-13731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr +L+YP GApsV+CalC+++
  OMERI03G24390.1  7 CHGCRSVLRYPSGAPSVCCALCQAI 31
                     ***********************97 PP

2zf-LSD139.68.3e-134872125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y+r+A  VRC++C tV
  OMERI03G24390.1 48 CGGCRTLLMYTRNADTVRCSCCSTV 72
                     ***********************99 PP

3zf-LSD148.91.1e-1586109124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+Crt+L+YP+GApsV+Ca+C+ 
  OMERI03G24390.1  86 CGQCRTTLMYPYGAPSVKCAICHY 109
                      **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-12434IPR005735Zinc finger, LSD1-type
PfamPF069436.0E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.6E-144575IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-104872IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.3E-1283111IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-1486110IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPV MEMAHLICGG CRTLLMYTRN  60
ADTVRCSCCS TVNLVRPVNN IAHVSCGQCR TTLMYPYGAP SVKCAICHYI TNTGMNTVAP  120
TPSPMPTSSG SSYNAPPSGS LYNAPPPTSA PTSRPQNVTV VVENPMTVDE KGKLVSNVVV  180
GVTTGK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115690.0AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628086.11e-129protein LOL3
SwissprotQ6ASS21e-130LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0E0D4061e-129A0A0E0D406_9ORYZ; Uncharacterized protein
STRINGOS03T0639600-011e-129(Oryza sativa)
STRINGORGLA03G0252400.11e-129(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.77e-56LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]