PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 358aa    MW: 37236.9 Da    PI: 6.8719
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.2e-1931493127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknra.......... 77 
                       G+ F+P d+el++++L++k+++++++l  +i++vd+y++ P++L +         + ++    +yfF++ + ++   +r++ra          
  OMERI03G23590.1   3 GGLTFSPPDHELITKFLRPKIADDTIKL-PFIHDVDVYSAAPRELAArhvpargtdRGDGAGAVYYFFCPVSGTSGGARRRQRAvgggggasge 95 
                      699************************9.88**************844666654332222334669****999999889999987999998887 PP

              NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                        + g W+  g +k+vl+++g+ vg  + L +    +g+ ++ ++  W+m e+ 
  OMERI03G23590.1  96 aGHCGCWHPEGGKKAVLDAGGRRVGHLRRLSYGvreRGSGRRLTRLGWCMTEFG 149
                      666899**************************97767788888899******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.0421172IPR003441NAC domain
SuperFamilySSF1019413.79E-293172IPR003441NAC domain
PfamPF023653.9E-114149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAGGLTFSPP DHELITKFLR PKIADDTIKL PFIHDVDVYS AAPRELAARH VPARGTDRGD  60
GAGAVYYFFC PVSGTSGGAR RRQRAVGGGG GASGEAGHCG CWHPEGGKKA VLDAGGRRVG  120
HLRRLSYGVR ERGSGRRLTR LGWCMTEFGV DHGGGGGEAD AGGLVLCKMY RSPRAAQVEA  180
RLQAASASSS GSKRKAAADD LIHAPASSRH RHADVMPAGV DGDEVGSIHP SDSVQFLPEE  240
QTLVQTMDGP RSDHEVIMAL AMGATVDELL GPKHGEPGGS SPLIPAPPEP CSISGGGVEP  300
CTGPGPASLG GDMAMAFPAP PAGEFSWDKE LAWIRELLSG SPPRVPPCDQ NQQLLHGC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.12e-43NAC transcription factor NAM-2
TrEMBLA0A0E0D3Q40.0A0A0E0D3Q4_9ORYZ; Uncharacterized protein
STRINGOMERI03G23010.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158