PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G22530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 617aa MW: 66501.6 Da PI: 4.0119 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.6 | 4e-26 | 7 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L + +++ +e +fF+ ++ k+ +gkr++r + g+W+ + d e OMERI03G22530.1 7 LPPGLRFDPSDHELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWQGQRMavDGE 99 79****************************999**************743.456789*******************555599**9665522222 PP NAM 92 vlsk..........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 + ++ k +L f+ ++ ++g ++ Wvmhey++ OMERI03G22530.1 100 R--LvvpgdgggggD--GggleiTWRKYVLSFF-AEGERG-SSGWVMHEYAV 145 2..133456665550..055555899999****.444454.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-32 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.211 | 7 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-15 | 8 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MAGADGLPPG LRFDPSDHEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG 60 DEAFFFAGAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDGGGG GDGGGLEITW 120 RKYVLSFFAE GERGSSGWVM HEYAVTSPAD LASSPLRLYR VRFSGHGKKR KREPQCLDSH 180 DDEDGGVDQE RAAPRRAVAE TALFEGYGPL PAADATDQGS YGVIDGESSL LFHSLPGQSQ 240 IVLPADHDIN LYSSAESLFH AIHGAETQTA PLNEECCPPP LIVPLLQDKN STSDVMGDPS 300 LLLPERIDDD ELHCPLRESD MPDLPVSQTE GTEQKKLMPL LVSHCLPDLI VPRAEEADAT 360 AGAENPLLDE ERWSPPLPAS PTAALVKQNS YDLMAISSLL FSDLPDRIDD DDLSVSQTEG 420 TELSEQDSSG VIGDDYWRVF HGLSDLIALP AEEADATGGA EREEIALLDE ERRPPPQPAP 480 PTAALVPPLQ GQNSYDVMAD SSLLFADLPG RIDDDELQRS LRASDMPDQF LAQTEEPGAG 540 GGGGAAAALN KQSNSSPLGV EVPMALSDLE SPESMPLSDL EFPESIDEVL SYIDFTTDDT 600 SCLDFDMDEL FSDMPAD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135502 | 0.0 | AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | JN982314 | 0.0 | JN982314.1 Oryza sativa Japonica Group NAC transcription factor 69 (NAC69) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630217.1 | 1e-154 | NAC domain-containing protein 82 | ||||
TrEMBL | A0A0E0D3C6 | 0.0 | A0A0E0D3C6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G22020.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 1e-13 | NAC domain containing protein 41 |