PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G21590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23156.1 Da PI: 10.3925 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32 | 1.6e-10 | 16 | 53 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +++ r f k ++ ++KKA+ELS+L +++++v+++ + OMERI03G21590.1 16 SDTIRRAMFKKWQKSLMKKASELSTLYGVDACVVVYVE 53 566677889*************************9943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-4 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.647 | 4 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.41E-16 | 5 | 89 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-16 | 6 | 98 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-10 | 17 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MLAIARQKVN LRQLASDTIR RAMFKKWQKS LMKKASELST LYGVDACVVV YVEGEAQPMM 60 VWSSVPEARH VIERFRALPQ KDQYKNTTNL EGFLKQRITN LQEKVDKAKR ENDELETKLL 120 LLNGLDGCLP SLVGLTVEQI TSLNSMVEER LKKLRGNGLL ATPVPTSSKK KIIWDVWYNL 180 KARYVMDDSA KNGRLICRSS RAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC093312 | 0.0 | AC093312.7 Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879443.1 | 2e-93 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0E0D307 | 1e-147 | A0A0E0D307_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA03G0221500.1 | 1e-114 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-19 | M-type_MADS family protein |