PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G21280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 147aa MW: 17168.7 Da PI: 7.724 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.5 | 5.6e-10 | 110 | 146 | 1 | 39 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 kfY +YAk GFsvrk++ k++ +g i++r+fvCs+eg OMERI03G21280.1 110 KFYLDYAKGKGFSVRKNNLKRK--DGDIIWRQFVCSCEG 146 6****************99887..999**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.140 | 1.4E-28 | 16 | 77 | IPR003213 | Cytochrome c oxidase, subunit VIb |
SuperFamily | SSF47694 | 2.09E-25 | 19 | 77 | IPR003213 | Cytochrome c oxidase, subunit VIb |
CDD | cd00926 | 5.53E-29 | 19 | 76 | No hit | No description |
ProDom | PD015172 | 2.0E-26 | 25 | 76 | No hit | No description |
Pfam | PF02297 | 1.0E-13 | 29 | 77 | IPR003213 | Cytochrome c oxidase, subunit VIb |
Pfam | PF03101 | 8.5E-8 | 110 | 147 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:1902600 | Biological Process | hydrogen ion transmembrane transport | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0004129 | Molecular Function | cytochrome-c oxidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MMLLVGLQCV SNIISIHQIE IKTAPADFRF PTTNQTRHCF TRYIEYHRCV NAKGEATADC 60 EKFAKYYRSL CPAEWVRSDI MSLSYVSLED QEEYKMMGTV VFSSEEEGYK FYLDYAKGKG 120 FSVRKNNLKR KDGDIIWRQF VCSCEGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6giq_j | 6e-16 | 21 | 77 | 9 | 65 | Cytochrome c oxidase subunit 6B |
6hu9_j | 7e-16 | 21 | 76 | 8 | 63 | Cytochrome c oxidase subunit 6B |
6hu9_v | 7e-16 | 21 | 76 | 8 | 63 | Cytochrome c oxidase subunit 6B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003617 | 2e-98 | AP003617.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0502H06. | |||
GenBank | AP003622 | 2e-98 | AP003622.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0633E08. | |||
GenBank | AP014962 | 2e-98 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 2e-98 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0D2V6 | 1e-107 | A0A0E0D2V6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G20970.1 | 1e-108 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-07 | FAR1 family protein |