PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G17430.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 332aa MW: 36044.7 Da PI: 10.0631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G17430.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	51	100	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ ++erE+ R ++N+ f eL +l + + + Ka iL+ +++ +++L OMERI03G17430.2 51 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 100 678899*********************997....57788888998888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.0E-9	48	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-11	48	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.264	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0032259	Biological Process	methylation
GO:0008168	Molecular Function	methyltransferase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MKAGNGRGRF LEEAMVPSER GDVATAIRPA AADKLVHGPI SDKKCRKKVP RKVHKSEREK 60 LKRGHLNDLF GELGNMLEAD RQSNGKACIL TDTTRILRDL LSQVKSLRQE NSTLQNESNY 120 VTMERNELQD ENGALRNEIS DLQNELRMRA TGSPGWGHGA TGSPLPVPPS PSAVFPLQQP 180 MQPSPMTTST VFPLQQPLAQ QAVIEPSSAR QPLELKLFLE APPVEDPEPS EDQEAPNNVA 240 RPQPRYPAEA SSWPISLGLP RMEDEQMSAA VWAAASVGAD IHRVGRRLGQ GPGSQGRRLL 300 GVGEPPRRSP LGGRDAARRS AVSRSAAAGA VR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT830139	0.0	CT830139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104M07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633301.1	1e-175	transcription factor BHLH062-like
Refseq	XP_015633302.1	1e-175	transcription factor BHLH062-like
Swissprot	Q69V10	1e-77	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A0E0D1A5	0.0	A0A0E0D1A5_9ORYZ; Uncharacterized protein
STRING	OMERI03G17540.1	0.0	(Oryza meridionalis)
STRING	OMERI03G17570.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	3e-29	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]