PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G14760.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 329aa MW: 35806 Da PI: 7.046

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G14760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.8e-10	134	181	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l OMERI03G14760.1 134 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 181 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	130	194	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	132	195	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-8	134	180	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	134	185	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-8	134	188	No hit	No description
CDD	cd14703	3.92E-22	135	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MQEPKHTDPA AMRGAHHRRA RSEVAFRLPD DLDLGGGGAG AFDEIGSEDD LFSTFMDIEK 60 ISSGPAAAGG SDRDRAAETS SPPRPKHRHS SSVDGSGFFA AARKDAAASL AEVMEAKKAM 120 TPEQLSELAA IDPKRAKRIL ANRQSAARSK ERKARYITEL ERKVQTLQTE ATTLSAQLTL 180 FQRDTTGLSA ENAELKIRLQ AMEQQAQLRD ALNDALKQEL ERLKLATGEM TNSNETYSMG 240 LQHVPYNTPF FPLAQHNAAR QNGGTQLPPQ FQPPRPNVPN HMLSHPNGLQ DIMQQDPLGR 300 LQGLDISKGP LVVKSESSSI SASESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059473	0.0	AK059473.1 Oryza sativa Japonica Group cDNA clone:001-028-E05, full insert sequence.
GenBank	AK070466	0.0	AK070466.1 Oryza sativa Japonica Group cDNA clone:J023052D02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632816.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	0.0	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0E0D052	0.0	A0A0E0D052_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GM27	0.0	A0A0E0GM27_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0NUP8	0.0	A0A0E0NUP8_ORYRU; Uncharacterized protein
STRING	ORUFI03G17050.1	0.0	(Oryza rufipogon)
STRING	OS03T0336200-02	0.0	(Oryza sativa)
STRING	ONIVA03G17500.2	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-72	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]