PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G14370.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 427aa    MW: 46522.6 Da    PI: 6.7622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G14370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.73.2e-34215269155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWtpeLHe+Fv+av++LGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  OMERI03G14370.1 215 KQRMRWTPELHESFVHAVNKLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 269
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.835212272IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-31213271IPR009057Homeodomain-like
SuperFamilySSF466893.94E-18213269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-25215269IPR006447Myb domain, plants
PfamPF002498.8E-10217268IPR001005SANT/Myb domain
PfamPF143791.6E-25298345IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSSSLPILPK SLKDIPRSHN TQNILMPGQL PNDSMPLHHS ATQSSISHPR ASVVRSSYSA  60
MLGYAANPID SVSSHEGHFM AAPFISQSLN AEMLQSLCNN NTHGGHTVPT FFPAPACGAP  120
GYMDTITVPD NHTQSGSSTV TSDAAKQNEW WADIMNDDWK DILDATATDS QSKSMAQPSN  180
SAASQPAFNQ STSSHSGDIC PVTSPPNNSN ASASKQRMRW TPELHESFVH AVNKLGGSEK  240
ATPKGVLKLM KVDGLTIYHV KSHLQKYRTA RYKPDLSEGK TQEGKTTDEL SLDLKASMDL  300
TEALRLQMEV QKRLHEQLEI QRKLQLRIEE QGKYLQKMFE KQCKSSTQSV QDPSSGDTAT  360
PSEPSNSVDK DSDAALDPNR IGDNHPKNST NVGANLKTAA TESPDSPVIA TDGSELPQEK  420
RRRVHES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-30215273260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419423KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634860.0AK063486.1 Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence.
GenBankAK1095100.0AK109510.1 Oryza sativa Japonica Group cDNA clone:002-104-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632603.10.0protein PHOSPHATE STARVATION RESPONSE 1
SwissprotB8ANX90.0PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA0A0E0CZY80.0A0A0E0CZY8_9ORYZ; Uncharacterized protein
STRINGONIVA03G17050.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19713789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-69phosphate starvation response 1