PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G13930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 1055aa MW: 117347 Da PI: 6.3052 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.2 | 4.9e-10 | 48 | 78 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k+ rr+++NReAAr+sR+RKka++++Le OMERI03G13930.1 48 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 78 5899************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.2E-7 | 45 | 108 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.875 | 47 | 91 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.59E-22 | 49 | 101 | No hit | No description |
SuperFamily | SSF57959 | 2.65E-6 | 49 | 90 | No hit | No description |
Pfam | PF00170 | 5.3E-7 | 49 | 79 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-7 | 51 | 90 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 52 | 67 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.4E-32 | 131 | 206 | IPR025422 | Transcription factor TGA like domain |
SuperFamily | SSF51735 | 9.65E-49 | 471 | 660 | IPR016040 | NAD(P)-binding domain |
Gene3D | G3DSA:3.40.50.720 | 3.6E-61 | 473 | 656 | IPR016040 | NAD(P)-binding domain |
Hamap | MF_00966 | 74.543 | 474 | 946 | IPR001282 | Glucose-6-phosphate dehydrogenase |
TIGRFAMs | TIGR00871 | 1.3E-135 | 475 | 943 | IPR001282 | Glucose-6-phosphate dehydrogenase |
Pfam | PF00479 | 2.5E-46 | 479 | 657 | IPR022674 | Glucose-6-phosphate dehydrogenase, NAD-binding |
PRINTS | PR00079 | 2.2E-38 | 613 | 626 | IPR001282 | Glucose-6-phosphate dehydrogenase |
PRINTS | PR00079 | 2.2E-38 | 637 | 665 | IPR001282 | Glucose-6-phosphate dehydrogenase |
SuperFamily | SSF55347 | 2.26E-86 | 647 | 944 | No hit | No description |
Gene3D | G3DSA:3.30.360.10 | 1.3E-100 | 657 | 943 | No hit | No description |
Pfam | PF02781 | 1.1E-88 | 660 | 942 | IPR022675 | Glucose-6-phosphate dehydrogenase, C-terminal |
PRINTS | PR00079 | 2.2E-38 | 689 | 706 | IPR001282 | Glucose-6-phosphate dehydrogenase |
PRINTS | PR00079 | 2.2E-38 | 707 | 723 | IPR001282 | Glucose-6-phosphate dehydrogenase |
PRINTS | PR00079 | 2.2E-38 | 784 | 810 | IPR001282 | Glucose-6-phosphate dehydrogenase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006006 | Biological Process | glucose metabolic process | ||||
GO:0006098 | Biological Process | pentose-phosphate shunt | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004345 | Molecular Function | glucose-6-phosphate dehydrogenase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0050661 | Molecular Function | NADP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1055 aa Download sequence Send to blast |
MADASSRTDT STVLDTDDKN QMVDGQSGAI VPSNSSDRSD RSDKPMDQKV LRRLAQNREA 60 ARKSRLRKKA YVQQLESSKL KLASLEQEIN KARQQGIYIS SSGDQTHAMS GNGAMTFDLE 120 YARWLEEQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFRLKGVAA KADVFHILSG 180 MWKTPAERCF LWLGGFRSSE LLKLLVNQLE PLTEQQLLGL SNLQQSSQQA EDALSQGMEA 240 LQQSLADTLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI 300 LTIRQAARAL LAIHDYFSRM AGLAVSASPA PAQASFRPAA AASRFGPCAQ VAGPAANFRT 360 RVCGLRCLIA AKLKFRKTLK RHGWQLRRNL EVRANDKVPD WLEATPLTEN IMSRDVQLAY 420 DSGGETSNTC PDTLDSSVIE QSSMHHKLNP SETHSPVLKE DPVLFDDPPE SAAPLCIAVI 480 GATGELAKNK VFPALFALYY SGFLPQNVGI FGYSRKTLTD EDLRSMIEAN LTCRVDHHEN 540 CDEKLNEFLK RTYYIDAGYD NKDGMVKLNS RMSQIEGNCA ANRIFYLAVP QEALLDVALS 600 LADSAQTMQG WNRIIIEKPF GFTGLSSHRV TQSLLSRFEE EQIYRIDHLL GKDLIENLTV 660 LRFSNLVFEP LWSRTYIRNV QVIFSEETAA EIQGRYFGNY GIIRDIVHSH ILQTIALFAM 720 EPPVSLDGED IRDEKVKVLR SIRQVNLEDV VLGQLKDTSV KVDRYTKSLT PTYFAAAMYI 780 DNSRWDGVPF LIKTGIGLME NRAEIRIQFR HVPGNIYRER FGHDIDLDTN ELILRDQPEE 840 AILLKVNNKV PGLGLQLDAS ELNLLYRDRY NVELPDSYEH LLLDVLDGDS HLFMRSDEVA 900 AAWNVLTPLI HEIDQNRIAP ELYEAGGRGP VNAYYLAAKH GVRLDDEWSA ILLKVFPQIA 960 PPGAAEAEKC MRRLSTSFGT CGFPRGGAEK QSKGAVSLLG TTGSFTCAAN ASRTSRDVKA 1020 VPESMIVPPV PFFRANSDSG TGSLVDPTVM PFSER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2bh9_A | 1e-119 | 479 | 951 | 10 | 484 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
2bhl_A | 1e-119 | 479 | 951 | 10 | 484 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
2bhl_B | 1e-119 | 479 | 951 | 10 | 484 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
5ukw_A | 1e-119 | 479 | 951 | 13 | 487 | Glucose-6-phosphate 1-dehydrogenase |
6e08_L | 1e-119 | 479 | 951 | 36 | 510 | Glucose-6-phosphate 1-dehydrogenase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121967 | 0.0 | AK121967.1 Oryza sativa Japonica Group cDNA clone:J033108F18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879520.1 | 0.0 | glucose-6-phosphate 1-dehydrogenase 4, chloroplastic | ||||
TrEMBL | A0A0E0CZR5 | 0.0 | A0A0E0CZR5_9ORYZ; Glucose-6-phosphate 1-dehydrogenase | ||||
STRING | OMERI03G14100.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1031 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-131 | TGACG motif-binding factor 6 |