PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G13590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 25131.8 Da PI: 12.0363 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.2e-08 | 2 | 34 | 18 | 48 |
HTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 18 qlGggtWktIartmg..kgRtlkqcksrwqkyl 48 + G+++W+++a+ ++ +R++ qc++rw+++l OMERI03G13590.1 2 ENGSRHWRRVAAQIPrrRRRSPVQCRDRWRDHL 34 57999*************************986 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 84 | 131 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +WT+eEd +l ++ + G+++W+++a+ ++ +R++ qc++rw+++l OMERI03G13590.1 84 AWTPEEDAILERLAMENGSRHWRRVAAQIPrrRRRSPVQCRDRWRDHL 131 7********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.006 | 1 | 38 | IPR017930 | Myb domain |
SMART | SM00717 | 71 | 1 | 36 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-6 | 2 | 34 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00385 | 2 | 34 | No hit | No description |
SuperFamily | SSF46689 | 7.9E-7 | 3 | 43 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-6 | 3 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.154 | 79 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-11 | 81 | 133 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.98E-17 | 83 | 185 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-14 | 84 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.63E-10 | 84 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-16 | 84 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5 | 136 | 191 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.866 | 139 | 189 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 144 | 189 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MENGSRHWRR VAAQIPRRRR RSPVQCRDRW RDHLARDVFH RPEWALAHLL IPRELSSSSS 60 TTVASSPASP LLGWCVVCIR LPPAWTPEED AILERLAMEN GSRHWRRVAA QIPRRRRRSP 120 VQCRDRWRDH LARDVFHRPF TSADDTELAR LCLRLDDACA AAGHRWKHVS RAVYGRSSCA 180 VKRRWRKLRK SDAFLSALWR PRTTAPTANA AITTTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 4e-13 | 85 | 185 | 14 | 103 | MYB21 |
3osf_D | 4e-13 | 85 | 185 | 14 | 103 | MYB21 |
3osg_A | 4e-13 | 85 | 185 | 14 | 103 | MYB21 |
3osg_D | 4e-13 | 85 | 185 | 14 | 103 | MYB21 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642261.1 | 3e-77 | transcription factor MYB44 | ||||
TrEMBL | A0A0E0CZK9 | 1e-150 | A0A0E0CZK9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G13740.1 | 5e-91 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-06 | myb domain protein r1 |