PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI03G13500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22066.9 Da PI: 6.2847 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 36.3 | 1.6e-11 | 110 | 166 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardP..vyGavgvilklqqqleqlkaelallkee 100 ++lp ++r d +s lvye +a++rdP vyG+v+ i+ lq+q +ql+ +la++++e OMERI03G13500.1 110 CRELPAQQRGDEVSNLVYEVNAQMRDPvpVYGCVEAISFLQNQASQLQMQLAAAQAE 166 67899**************999999963379**********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 7.3E-9 | 111 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MAAMLEKGGG SRGRKRRRGP EAMAQGAQGA PLQPEAATTG IRWRCTGLAW DALGGVRDEG 60 EEDGVAKEHE VVGLFGIGDG VEGLDTGHHV FPASTLGVAA SMALKARTPC RELPAQQRGD 120 EVSNLVYEVN AQMRDPVPVY GCVEAISFLQ NQASQLQMQL AAAQAEILCI QDATPRRQRE 180 REECKRERRE RRGEGEKVLT WTS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 12 | 18 | GRKRRRG |
2 | 13 | 17 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0CZJ8 | 1e-145 | A0A0E0CZJ8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G10020.1 | 3e-25 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-11 | LBD family protein |