PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G11570.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 398aa    MW: 40464.8 Da    PI: 9.6676
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G11570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.33.8e-3987146261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+s
  OMERI03G11570.1  87 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKRS 146
                      67899*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3671145IPR003851Zinc finger, Dof-type
PfamPF027016.5E-3390145IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.75891145IPR003851Zinc finger, Dof-type
PROSITE patternPS01361093129IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVFPSVPAYL DPSNWNNQQG QPPRPANVGG GDAQHLPVGP SAATAAPGEI GGLPTSSSSA  60
SAAAAAAQQA RPNSMAERAR LARAPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKT  120
CRRYWTRGGS LRNVPVGGGC RRNKRSGKSS ASAAAGASSS SSKPSSSAAR QLPGGGASPM  180
PSAAASTQPG GAAAGAIIPP SGLSSMSHHL PFLGAMHPPG PNLGLTFSAG FQPLGGMHHH  240
VDAVDQFPVA SGGGATIGAS LEQWRVQQQQ QQQPPQQHQF PFLGGALELP PPPPMYQLGL  300
EASRAAGTGA TAAAAAFTLG QTSATATTSR QEGSMKLEDS KGLEMSLQRQ YMAALRQGDD  360
VWGNNNGGNG GGGSWTMNFP GFHSSSGGGG GDDGGGVL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104760.0AC210476.2 Oryza glaberrima clone OG_BBa0060N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629100.10.0dof zinc finger protein DOF3.6 isoform X1
TrEMBLA0A0E0CYQ60.0A0A0E0CYQ6_9ORYZ; Uncharacterized protein
STRINGOMERI03G11610.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123012432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-42DNA binding with one finger 2.4