PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G10300.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 711aa MW: 78824.9 Da PI: 6.3857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G10300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.7	3e-26	70	160	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++ r+ tr+gCka+l++kk +kw+vtk+ + HnH OMERI03G10300.1 70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEnlhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHG 160 6*****************************************999998899999********************************5 PP
2	FAR1	86.4	4.2e-27	207	300	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + +k ++++r+r+ tr+gCka+++vk++++gkw+v+k+++eHnH+l OMERI03G10300.1 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFVKEHNHSLL 300 9****************************************9999999999999*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-23	70	160	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-24	207	300	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MEGVVTSTVG EPKQDNEPRN SSIELPRAIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM 60 EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV 120 DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN 180 PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FVKEHNHSLL 300 SSRAVLITSN DASREVIDFA ATSNDPNEVK AEGCSAGIQC NSTDSLTVLY NHLCQEAIKF 360 AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK 420 IMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAGEVKH VSESSCLAAN 480 RKEDSSQKSQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSAECS PDIFPFSWNA 540 DGQYRLLAAP IEAVPISYRP AEPIQQPHGS FPNSGPLPGF LPKLYKRGKG PNSLVHATAL 600 ACGARVVPPE EAASLIKAIE SKIRSGGATI AKLPSSSLTP LIPEVASMSS SSEDDEENDH 660 SEPLMASVEH NCHDQSSEEM KLEADPPSEL ETEAENCSAQ PENENNGPTH C

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MEGVVTSTVG EPKQDNEPRN SSIELPRAIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN  180
PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FVKEHNHSLL  300
SSRAVLITSN DASREVIDFA ATSNDPNEVK AEGCSAGIQC NSTDSLTVLY NHLCQEAIKF  360
AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK  420
IMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAGEVKH VSESSCLAAN  480
RKEDSSQKSQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSAECS PDIFPFSWNA  540
DGQYRLLAAP IEAVPISYRP AEPIQQPHGS FPNSGPLPGF LPKLYKRGKG PNSLVHATAL  600
ACGARVVPPE EAASLIKAIE SKIRSGGATI AKLPSSSLTP LIPEVASMSS SSEDDEENDH  660
SEPLMASVEH NCHDQSSEEM KLEADPPSEL ETEAENCSAQ PENENNGPTH C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066641	0.0	AK066641.1 Oryza sativa Japonica Group cDNA clone:J013072M14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630687.1	0.0	uncharacterized protein LOC4332292
TrEMBL	A0A0E0CY81	0.0	A0A0E0CY81_9ORYZ; Uncharacterized protein
STRING	OMERI03G10350.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-30	FAR1 family protein