PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G09350.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 719aa MW: 78751.2 Da PI: 6.6655 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 14 | 56 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E++ + +a +q G++ +++I +++ ++ q++++++ + OMERI03G09350.2 14 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 56 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-9 | 10 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.155 | 10 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-7 | 11 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 14 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-7 | 14 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-6 | 14 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042254 | Biological Process | ribosome biogenesis | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0030529 | Cellular Component | intracellular ribonucleoprotein complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MSLVRSAPAR QWAAWTRQEE QNFFNALRQV GKNFEKITLR VQSKSKDQVR HYYYRLVRRM 60 KKLLGPEFSL DAKNSKDTIA AMLCWWSLLE KFSCSASKLH LKPRRFKTFV EALGNQLLKD 120 RNKTRKKCPR GDVCLSSSSS AVNRTPGNES FSVKLLAVDV SNGSKVGSSK GSFFKKVTEP 180 NCNNKSGATK GDLSATRTVK QKRRAGGIVA SAAYKKWERA AMAGVSLVAD AAEELERNTV 240 NADGRMLSPS SSNVCTVDGL GTNHIKEADQ QAPAKLKLQL FPINEATRKA LEKDEHNPHL 300 ELTLSARKKI SSVLEHLNRK WGNSNIASGE LLLFPYCAHQ EDLATYQRWT TKDTVAVADV 360 FLSVNSPSVF RLRYGWFSLA ELEAGVSEIF LTHFENCLIP EDIHAKSPLE ACVQKDGNSL 420 SSCAPEQNPC GSKDQSALLL AMPSSTGKSA QVPEQCIDVL PSQFGRQNQD QATTKQVFEV 480 DQGMDCAAVS EGEWADTLTD ISVGYLLTEA SRGANTDCPG TSVVKNTLLL ENPCSYDSFD 540 AAVALHASRY KSAEQPALAS HSSIWGAEET CDAFSFNLPA SRKREGSNNS ASSSPDSDSD 600 VHPSNSEGFQ GFLQDLSGAA VAHNPCIDDA KDIESLCAES PPRSDHDSAP KDQSLADLYW 660 PDSLGPLDLD IPSATYHADD LLLGDSQNSW NRMMANSLDA FRNLSFFTAD KNDSIPSIM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102688 | 0.0 | AK102688.1 Oryza sativa Japonica Group cDNA clone:J033102O16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632626.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_015632627.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A0E0CXS9 | 0.0 | A0A0E0CXS9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G09420.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 1e-166 | TSL-kinase interacting protein 1 |