PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G09110.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 441aa    MW: 46399.2 Da    PI: 9.9899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G09110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.4e-0778100123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++Cg+ F r  nL+ H r+H
  OMERI03G09110.1  78 YVCEICGQGFQREQNLQMHRRRH 100
                      9*********************9 PP
2zf-C2H210.70.0016177199123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  C k +  +s++k H++t+
  OMERI03G09110.1 177 WVCARCAKGYAVQSDYKAHLKTC 199
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.3E-777100No hitNo description
PROSITE profilePS5015711.75978100IPR007087Zinc finger, C2H2
SMARTSM003556.5E-478100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355110141171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.3E-7172197No hitNo description
SMARTSM00355270177204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AADQPSPAKR KRRPPGTPDP  60
DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH KVPWRLVKRP AAATAAEDGG  120
AAGGGGGGGG GAGGGARKRV FVCPEPSCLH HDPAHALGDL VGIKKHFRRK HGGRRQWVCA  180
RCAKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE HQDACNSGRV RGEVVPVATT  240
LPVIRPAALR HHHHHPPPPP PPPELQLLPA STTAPLAAAF SSNSTTTTTT GSSSHEQHAT  300
TMTTTKLQLS IGPAAVVVAA SGGGACAAAA GGEEEEQQRE EVRRALEEKA AVDAARERAR  360
EEAAAAERAL EDARRARHRA RGELEKALAL RDHAARLIAQ VTCHACRQRS LAVMSMAAVD  420
GHGASAVARE HLRGGGVGAG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16173227357Zinc finger protein JACKDAW
5b3h_F1e-16173227357Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376980.0CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence.
GenBankJQ6815280.0JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629419.10.0protein indeterminate-domain 16
TrEMBLA0A0E0CXN00.0A0A0E0CXN0_9ORYZ; Uncharacterized protein
STRINGOMERI03G09120.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.14e-88C2H2-like zinc finger protein