PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G08830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 640aa MW: 68359.1 Da PI: 6.753 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.6 | 2.7e-12 | 291 | 347 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + +g rk + g ++t+++Aa+a++ a++k++g OMERI03G08830.1 291 SQYRGVTRHRWTGRYEAHLWDnSCRkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 347 78*******************54445554335555.77***99*************97 PP | |||||||
2 | AP2 | 46.8 | 7.1e-15 | 390 | 441 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OMERI03G08830.1 390 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 441 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-14 | 291 | 357 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.17E-17 | 291 | 355 | No hit | No description |
Pfam | PF00847 | 1.2E-9 | 291 | 347 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.662 | 292 | 355 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-21 | 292 | 361 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-12 | 292 | 356 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 293 | 304 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.65E-24 | 390 | 451 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-17 | 390 | 450 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-10 | 390 | 441 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 391 | 449 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-33 | 391 | 455 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-18 | 391 | 449 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 431 | 451 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MASGGGSSNW LGFSLSPHMP AMEVPSSSEP STAAHHHHHH PPAAAGAMSS PPPDSATTCN 60 FLFSPPAAQM VAPSPGYYYV GGAYGDGTST AGVYYSHLPV MPIKSDGSLC IMEGMMPSSS 120 PKLEDFLGCG NGSGHDPATY YSQGQEAEDA SRAAYQHHQL VPYNYQPLTE AEMLQEAAAA 180 PMEDAMAAAK NFLDTSYGAC YGNQEMPQPL SLSMSPGSQS SSCVSAAPQQ HQMAVVAAAA 240 APVAAAAGGG QGSNSNDGGE QRVGKKRGTG KGGQKQPVHR KSIDTFGQRT SQYRGVTRHR 300 WTGRYEAHLW DNSCRKDGQT RKGRQGGYDT EDKAARAYDL AALKYWGLST HINFPLENYR 360 DEIEEMERMT RQEYVAHLRR RSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 420 TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI TRYDVDKIME SSSLLPGEAA RKVKAIEAAP 480 DHVPIGRELG ATEEASAATV MGTDWRMVLH GSQQQQAAAC TEATVDLQKG FMGDAHSALH 540 GIVGFDVESA AADEIDVPGG KISGINFSNS SSLVTSLSNS REGSPERLGL AMLYAKHHPT 600 AVSLAAMNPW MPMPAPAAAH VMRPPSAIAH LPVFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106306 | 0.0 | AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629410.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 isoform X2 | ||||
Swissprot | Q84Z02 | 1e-145 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A0E0CXJ5 | 0.0 | A0A0E0CXJ5_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI03G09610.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-102 | AP2 family protein |
Publications ? help Back to Top | |||
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