 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OMERI03G08560.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LSD |
| Protein Properties |
Length: 268aa MW: 28645.8 Da PI: 8.098 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI03G08560.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 36.3 | 9.3e-12 | 139 | 162 | 2 | 25 |
zf-LSD1 2 ggCrtlLsYPrGApsVRCalCdtV 25
+gCr+lL+YP+GA+s++Ca+ +tV
OMERI03G08560.2 139 SGCRNLLMYPAGATSICCAVFNTV 162
59*****************86665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MVVLYVTFLS KGGGCGEGLS CSMCLLVEAD CCAPIYLTYL PGGVRNVGLC HKLIRERKGD 60
FSCLTVAGIC EASTSDAIGS GSWHGNAGSP CPISNSSCAI YTSQWYGFQL GTARTQLLFE 120
FFSLMLSHDC AILSQLVYSG CRNLLMYPAG ATSICCAVFN TVTAVPAPEQ KNSCNVHENK 180
ERLKGNTNGF KAPQRCARRV DGACTQVARE EVHTEVALSR VSTRLDRGTQ VQKGREQREL 240
LPVPSVPSSP TTARPPPPPP PHGQATVA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK061509 | 1e-108 | AK061509.1 Oryza sativa Japonica Group cDNA clone:006-309-F08, full insert sequence. |
