PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G06990.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26436.7 Da    PI: 6.9419
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G06990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-1966119356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  OMERI03G06990.1  66 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 119
                      56689***********************************************99 PP
2HD-ZIP_I/II113.61.2e-3666156292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  +L+e+l+
  OMERI03G06990.1  66 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLA 156
                      9**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-1760120IPR009057Homeodomain-like
PROSITE profilePS5007116.82761121IPR001356Homeobox domain
SMARTSM003891.6E-1664125IPR001356Homeobox domain
PfamPF000462.9E-1666119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-1766119IPR009057Homeodomain-like
CDDcd000869.54E-1666121No hitNo description
PRINTSPR000315.5E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000315.5E-6101117IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSREEDEKLL FPSFAFPAEC FPEAATSAGE QKKARQRRRR KVKPEAAAAA AAAALAGESG  60
GDEQAKKRRL SDEQARFLEM SFKKERKLET PRKVQLAAEL GLDAKQVAVW FQNRRARHKS  120
KLMEEEFAKL RSAHDAVVLQ NCHLETELLK LKERLADVEE EKAKLAAVAA ATTGGGGGGG  180
GGSSSPSSSS FSTVTYHPAL AGQFGVEAAA EEADLTYMSE YAYNSYMLEL AAAGYCGGVY  240
DQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172182TGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734460.0AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629042.11e-131homeobox-leucine zipper protein HOX12
SwissprotQ10QF21e-132HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLA0A0E0CWQ01e-175A0A0E0CWQ0_9ORYZ; Uncharacterized protein
STRINGOMERI03G06890.11e-175(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-30homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]