PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G06500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 989aa    MW: 110750 Da    PI: 5.7335
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G06500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.82.8e-55201363118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq
  OMERI03G06500.1  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113
                      55599***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Lee++ +ivlvhylevk
  OMERI03G06500.1 114 RRSYWMLEEDYMHIVLVHYLEVK 136
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.72715141IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.1E-7401487IPR013783Immunoglobulin-like fold
PfamPF018333.8E-8402480IPR002909IPT domain
SuperFamilySSF812966.82E-18402488IPR014756Immunoglobulin E-set
CDDcd001025.68E-4402489No hitNo description
SuperFamilySSF484039.95E-17591695IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-18593699IPR020683Ankyrin repeat-containing domain
CDDcd002042.00E-13594692No hitNo description
PROSITE profilePS5029718.059600704IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.763600632IPR002110Ankyrin repeat
SMARTSM002480.013633662IPR002110Ankyrin repeat
PROSITE profilePS500888.843633665IPR002110Ankyrin repeat
SMARTSM002481400672701IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8804857IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075806828IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407807836IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032808827IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022829851IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578830854IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4832851IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MTEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKAGKL SSRSTGHDDV LQASHADSPL SQLPSQTTEG ESSVSGQASE  180
YDETESGSYQ GLQATAPNTG FYSHGQDNLP VVLNESDLGT AFNGPNSQFD LSLWIEAMRP  240
DKGTHQIPLY QAPVPSEQSP FTGGPGIESF TFDEVYNNGL SIKDVDGDDT DGETPWQIPN  300
ASGTFATVDS FQQNDKTLEE AINYPLLKTQ SSSLSDIIKD SFKKNDSFTR WMSKELAEVD  360
DSQITSSSGV YWNSEEADSI IEASSSDQYT LGPVLAQDQL FTIVDFSPTW TYAGSKTRVF  420
IKGNFLSSDE VKRLKWSCMF GEFEVPAEII ADDTLVCHSP SHKPGRVPFY VTCSNRLACS  480
EVREFEFRPQ YMDAPSPLGS TNKIYLQKRL DKLLSLEQDE IQTTLSNPTN EIIDLSKKIS  540
SLMMNNDDWS ELLKLADDNE PATDDKQDQF LQNRIKEKLH IWLLHKVGDG GKGPSVLDEE  600
GQGVLHLAAA LGYDWAIRPT IAAGVNINFR DAHGWTALHW AAFCGRERTV VALIALGAAP  660
GAVTDPTPSF PSGSTPADLA SANGHKGISG FLAESSLTSH LQTLNLKEAM RSSAGEISGL  720
PGIVNVADRS ASPLAVEGHQ TGSMGDSLGA VRNAAQAAAR IYQVFRMQSF QRKQAVQYED  780
ENGAISDERA MSLLSAKPSK PAQLDPLHAA ATRIQNKFRG WKGRKEFLLI RQRIVKIQAH  840
VRGHQVRKHY RKIIWSVGIV EKVILRWRRR GAGLRGFRPT ENAVTESTSS SSGNVTQNRP  900
AENDYDFLQE GRKQTEERLQ KALARVKSMV QYPDARDQYQ RILTVVTKMQ ESQAMQEKML  960
EESTEMDEGL LMSEFKELWD DDMPTPGYF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631249.10.0calmodulin-binding transcription activator 1 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0E0CWH50.0A0A0E0CWH5_9ORYZ; Uncharacterized protein
STRINGOMERI03G06390.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]