PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G06380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 309aa MW: 33376.5 Da PI: 4.4473 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 72 | 124 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ F +++++ ++++++A+ lgL+ rqV +WFqNrRa++k OMERI03G06380.1 72 KRRLALEQVRALERSFDTDNKLNPDRKARIARDLGLQPRQVAIWFQNRRARWK 124 4467789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.2 | 7.1e-41 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE+sF++++kL+p+rK+++ar+Lglqprqva+WFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e OMERI03G06380.1 70 EKKRRLALEQVRALERSFDTDNKLNPDRKARIARDLGLQPRQVAIWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALATEIRE 162 69**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.59E-18 | 60 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-18 | 69 | 130 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.503 | 70 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.85E-17 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 8.7E-16 | 72 | 124 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-19 | 78 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.5E-5 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.5E-5 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-15 | 126 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MKRPTSSRKS KKPAGENLAF SEEGSLPAAT MEQQDEAELE VDDDDDEEVD EDMAGVHAAQ 60 SPSPSCGLGE KKRRLALEQV RALERSFDTD NKLNPDRKAR IARDLGLQPR QVAIWFQNRR 120 ARWKTKQLER DFAALRARHD ALRADCDALR RDKDALATEI RELREKLSKP ADTAASVKVE 180 AGNDAAVGAA AATVCKDGSS DDSDSSVVFN DEASPYSGAA FIGFGPQFLV DDASAATVGC 240 SSSLPALESK WHGPYSDDSC KGGVYGFTEE WLAACSGEMA GNDAAGFFSD EHASNLNFGW 300 CASGNEGWE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831039 | 0.0 | CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628283.1 | 1e-179 | homeobox-leucine zipper protein HOX13 isoform X1 | ||||
Swissprot | Q10QP3 | 1e-180 | HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | A0A0E0CWF9 | 0.0 | A0A0E0CWF9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G06290.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 7e-28 | homeobox protein 16 |
Publications ? help Back to Top | |||
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