PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G05340.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 533aa    MW: 57087.5 Da    PI: 7.5914
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G05340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.81e-11241297155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  OMERI03G05340.1 241 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 297
                      789******************333.44555535555.779999**************98 PP
2AP246.41e-14342391355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OMERI03G05340.1 342 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 391
                      9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-14241307IPR016177DNA-binding domain
CDDcd000184.86E-17241307No hitNo description
PROSITE profilePS5103216.871242305IPR001471AP2/ERF domain
PfamPF008471.1E-8242297IPR001471AP2/ERF domain
SMARTSM003802.0E-22242311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-12242306IPR001471AP2/ERF domain
PRINTSPR003679.1E-6243254IPR001471AP2/ERF domain
CDDcd000181.95E-23340401No hitNo description
SuperFamilySSF541719.15E-18340401IPR016177DNA-binding domain
PROSITE profilePS5103219.203341399IPR001471AP2/ERF domain
SMARTSM003802.9E-33341405IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18341399IPR001471AP2/ERF domain
PfamPF008471.4E-9342391IPR001471AP2/ERF domain
PRINTSPR003679.1E-6381401IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD  60
APDWRHAEAK DPKLEDFMSV SYSNKNSSSC CGHADQIKYH NVHDVQAFST PYFHGHGGSG  120
VGIDINMNAP PAGCTGVLPD HRPPPPQQDH IFLPPHGQYF LGPPNPMAPA PMYNAGGGVV  180
DGSMSISGIK SWLRQAMYVP ERSAAALSLS VPAAPPSEAP LPPAAMPVVR KPAQTFGQRT  240
SQFRGVTRHR WTGRYEAHLW DNTCRKEGQT RKGRQGGYDK EEKAARAYDL AALKYWGPTT  300
HINFPLSTYE KELEEMKHMT RQEFIAHLRR NSSGFSRGAS MYRGVTRHHQ HGRWQARIGR  360
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI SKYDVKRICS STHLIGGDLA  420
CRRSPTRMLP PDAPAGAAGV DVVVAPGDHQ QISAGGGGAS DNSDNASDSH RGAHLLHGLQ  480
YAHAMKFEAG ESSGGGDGTT TNWMAAAAAA ARPVAGIPTT VHHQLPVFAL WND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851150.0AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ1PFE11e-119AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0E0CW070.0A0A0E0CW07_9ORYZ; Uncharacterized protein
STRINGORUFI03G05420.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-113AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]