PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G03490.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 216aa MW: 23139.9 Da PI: 9.02 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 3.1e-19 | 121 | 154 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR gpdg++tLCnaCG+++++ + OMERI03G03490.4 121 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGR 154 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.517 | 115 | 151 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.1E-15 | 115 | 165 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.18E-15 | 117 | 179 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.2E-14 | 119 | 152 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.48E-16 | 120 | 169 | No hit | No description |
Pfam | PF00320 | 1.5E-17 | 121 | 154 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 121 | 146 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005794 | Cellular Component | Golgi apparatus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0008375 | Molecular Function | acetylglucosaminyltransferase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MVGDKDAAAL AGELTGDAGA SLNGFFDHTG LEAAVVGEGQ GEGEEEEELE WLSNKDAFPS 60 VDTMAAEVES AAPGAPARAA VGPRTKGLRR RRRVTAPWSL APLLSRPRQA AADAGAPRRR 120 CTHCAVDETP QWRLGPDGPR TLCNACGVRF KSGRLFPEYR PANSPTFSPL LHSNSHRRVM 180 EMRLQSEEDA SAASRVNAKA RRAERAAARL AGKDKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242735 | 0.0 | AK242735.1 Oryza sativa Japonica Group cDNA, clone: J090048J08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629220.1 | 1e-104 | GATA transcription factor 3 | ||||
Swissprot | Q8L4M6 | 3e-36 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | A0A0E0CV61 | 1e-153 | A0A0E0CV61_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G03410.1 | 1e-154 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 6e-36 | GATA family protein |
Publications ? help Back to Top | |||
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