PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G02030.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 425aa    MW: 45156.3 Da    PI: 5.9584
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G02030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.6e-09276334563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr +r   NR +A rs +RK  +i+eLe+kv+ L++e + L  +l +++  +a l +++
  OMERI03G02030.1 276 KRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLATQN 334
                      999***************************************99999888887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-15272336IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599274337IPR004827Basic-leucine zipper domain
PfamPF001701.7E-8276334IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.26E-11276327No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-10276333No hitNo description
CDDcd147035.16E-22277328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNGGIGDALM QPQHVQVMSS SLPMVASTFV AEPPAAAANK PRAAGLPPTP PQVFAAQRAA  60
AGGDVCMEES AQGGGGGLPP RKAHRRSSSD VPFGYLAGQH QLLPPKVEAG WGHLGAGAGG  120
AVAGDDLFNA YLNLEGLDGL NSSDDRHDEG DSRGSSIKTN GADSSENESE ECADDTRGGI  180
RLWSADGGER REGVKRNATG EPATAPLARH ARSLSMDSLI GKFNFTAGTA AAAGNGAALG  240
PNRFSLEFGS GEFTPSEMKK IMADEKLAEM ALADPKRVKR VLANRQSAAR SKERKMRYIA  300
ELEQKVQILQ SEATNLSAQL TMMQRDSAGL ATQNNELKFR LHAMEQQAQL RDALNEALTT  360
EVQRLKLATA ELGDSCSSSS LAQQIQLNAQ NQMFQLQQQQ ATQIPFYQLQ QSQQNGAAKN  420
NESKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104620.0AC210462.1 Oryza glaberrima clone OG_BBa0033I09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627932.10.0transcription factor RF2b-like
TrEMBLA0A0E0CUJ00.0A0A0E0CUJ0_9ORYZ; Uncharacterized protein
STRINGOMERI03G02010.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35363576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.36e-87bZIP family protein