PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G01220.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 202aa    MW: 21092.4 Da    PI: 4.9037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G01220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-172474156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     + y+G+r +  +g+Wv+eIr+p   gk+ r++lg++ t+e+Aa+a++aa+++l+g+
  OMERI03G01220.1 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYPTPEMAAAAYDAAALALRGA 74
                     68****986..5*********8...557*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-112473IPR001471AP2/ERF domain
SMARTSM003801.3E-272587IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-182582IPR016177DNA-binding domain
PROSITE profilePS5103220.1262581IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-272581IPR001471AP2/ERF domain
PRINTSPR003671.3E-62637IPR001471AP2/ERF domain
CDDcd000182.19E-152681No hitNo description
PRINTSPR003671.3E-66383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDRDESSGTQ PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYPTPEMA  60
AAAYDAAALA LRGADAALNF PCTATSRPAP ASGSPDDIRA AAAAAAAAAM MIGSGHRGNQ  120
RAADASTSRA APATEAAVAA GAGDQKRVVD EDDVFEMPRL LVSMAEGLMM SPPRLSPSTD  180
GVGGVSPEDD EDEDGMSLWN HS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880266.11e-105ethylene-responsive transcription factor ERF027
RefseqXP_025880267.11e-105ethylene-responsive transcription factor ERF027
TrEMBLA0A0E0CU661e-140A0A0E0CU66_9ORYZ; Uncharacterized protein
STRINGOMERI03G01210.11e-141(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-27ERF family protein