PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G00820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1769aa    MW: 194964 Da    PI: 5.18
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G00820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-0617491769526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  OMERI03G00820.1 1749 ICK-FHENGYCRKGASCNYLHP 1769
                       799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.54E-8105156IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.2E-9105163IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.10E-19111156No hitNo description
SMARTSM002491.6E-6111157IPR001965Zinc finger, PHD-type
PROSITE patternPS013590112172IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001511.3E-5336424IPR019835SWIB domain
SuperFamilySSF475921.96E-22342425IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.105.3E-27343426IPR003121SWIB/MDM2 domain
PfamPF022011.1E-16346419IPR003121SWIB/MDM2 domain
SMARTSM007192.4E-44480589IPR004343Plus-3 domain
PROSITE profilePS5136031.869480612IPR004343Plus-3 domain
SuperFamilySSF1590423.53E-34480605IPR004343Plus-3 domain
PfamPF031262.6E-25485588IPR004343Plus-3 domain
SuperFamilySSF552771.44E-15734800IPR003169GYF domain
PROSITE profilePS5082914.522747799IPR003169GYF domain
SMARTSM004442.0E-13748801IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14749800IPR003169GYF domain
PfamPF022133.5E-9750789IPR003169GYF domain
PROSITE profilePS5010314.12617441769IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-517461768IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1769 aa     Download sequence    Send to blast
MEGATGAEML SPAEADWPPE LRLPPPPPAA ASEGEPPPAR AAVGMDDSQF LGSIIGLPAQ  60
PPQATAEALA VVGVKRRRGR PPKKRDGAAA ATAVVPAARP ARRREDEEEV VCFICFDGGN  120
LVVCDRRGCP KVYHPACIKR DEAFFQSRSK WNCGWHICSS CEKAVHYMCY TCTYSLCKVC  180
IKQGKFFSVR GTKGFCDTCY STILLIESKD EGDTKIVVDF DDQNSWEYLF KLYWVDLKGK  240
LSLTLEELTS AKSRWNAPTT YTRKEKDESS DDLYDANNDD DAGSDCSSGK RKRNSSRKKG  300
RKRRKPNSDC SIATKKVETV TRDDGTLPNK VPTEEASLPV DTKWASPELL EFVGHMRDGD  360
QSFISQFDVQ ALLLDYIKQN NLRDPQRKSQ IICDSRLHRL FRKTRVAHFE MLKLLEMHFI  420
ASEPSAVNDG SQGIINPDSA QIDHASGYND MAAKFSPDRR RRMHRKMERE PQANPEDYAA  480
IDMHNINLIY LRRSLMEDLI DDPTLSDKIS GAFVRIRISG LGQKQDMYRL VKVVGTHKVS  540
EKYSVGKKMT NFALEIMNLN KKEIITMDTV SNQDFTEEEC KRLRQSMKYD LISRLKVGDI  600
QEKAKIFQFV RVNDLLNTPE ERARRINEVL DVHVDSHMDP DYESDDEFGN KKAVERSVNW  660
ARSDPFVSPV KVKYSNSSQK NGDATRHLKN LSKQNTERKS GAARNFENSH SPVGMDIPKS  720
GTNVKSTRCE TMSPSSHGVV SSDMEPEKVW HYKDPSGNVQ GPFTLVQLSK WTSYFPRDMR  780
VWLTFESEER SLLLTEVLSK QPKDFGQPAS VTTSSKSTVA DTGQNRNTEI VDLNKAPSPV  840
GYSMLNSFET TVQSTKHSAP ERESVNSLDD RLSHSTDSVP PNDSNASNSQ AMCQIKHSGS  900
LPSPGSPHQR SDLHHDEVQG GRSGEWNNQH NSELWSPSMP QTSSSAHSNV ESHHDHYPSW  960
SQVQHDPKSS LQAGSWKDLN SMYDISQKLP SQRITRDVPS PVFAWSPSES RTASSQHEGS  1020
CLSSTTNLCT HDELHSSIAS AKAKSFAPAT PVEDRGSSSP SGMLSLSERA PICSPQSAPS  1080
ASASDTCKME ENMNQQKTLE ADISNTSVNQ SPQSKILPES SPDNQDAEHE YRSPPPISES  1140
KELSPQSRTT PESSPDNQDT EREYPSLPPI SGSKEISPQS RTILESSPDN QDIGHEYPSP  1200
PPIPESIELS PHSKVLPESS PDNQDIEPEC PSPPQIPESK ELSRQSKILP ESSPDNQDIE  1260
PECPSPPQIP ESKELSQQSK ILPESSPDNH DIKCEYSSPT PIPESKELSL QSKILPESSS  1320
DNQDIKCEDP SPTPISKSKE VSPQSKILSE SYLDNQDVER ECPSSILITE SKELAVDLPG  1380
SISLAPEKTA STDVGENSSL AFIFPKSTLA GDDALKSVFD MAKAHLEGED SKVKEELYVE  1440
STVVIRDDMV VNPASGVESI DMSENLLESL MEQSCGTFYM DGTTALEGFL SGSTKEEPQC  1500
SSPIALSTCS SPIALSPWGE HGYYQGDSVG SSLWGVQDDD PISNIWPLSS QAPALQYSSG  1560
STAHFIDEAT VTHGNNGVVL SSTPGEEVGL PNSGVCTDWG LVEQVNPEAN DASVSMIDKN  1620
SGLVDSQPSA NDGSDVDTAR NTNHNTNLSL NHETAVPLSR SSGEASRKHG FITDLNVATS  1680
EEALGNTKNW NPSAGNANRG SQRSHHRDRY SQISESWLLS SNYSRSRSDG FGTGGSSRST  1740
PRGQTQRGIC KFHENGYCRK GASCNYLHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290304RKRNSSRKKGRKRRK
2290305RKRNSSRKKGRKRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1214900.0AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0E0CU120.0A0A0E0CU12_9ORYZ; Uncharacterized protein
STRINGOBART03G00960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-169nucleic acid binding;zinc ion binding;DNA binding