PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G00460.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 297aa MW: 33946.8 Da PI: 5.6376

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G00460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.6	3e-50	23	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhP+deelv++yL++k ++++ ++++ + evd++ +ePwdLp+ +k +++ewyfFs r++kyatg r+nra k+gyWkatgkdk++l OMERI03G00460.1 23 LPPGFRFHPSDEELVCYYLRNKQQQQQQTAATSmLVEVDLHACEPWDLPEVAKVGSDEWYFFSWRERKYATGWRRNRASKQGYWKATGKDKPIL 116 79******************999996664444***********88888999********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g +ktLvfy+grap+g+kt Wvmhe+rl OMERI03G00460.1 117 H--PTVAGARKTLVFYSGRAPNGRKTAWVMHEFRL 149 9..7789************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-57	11	179	IPR003441	NAC domain
PROSITE profile	PS51005	56.272	23	179	IPR003441	NAC domain
Pfam	PF02365	1.2E-26	24	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDGLISDDSM MMGGELRAIE SRLPPGFRFH PSDEELVCYY LRNKQQQQQQ TAATSMLVEV 60 DLHACEPWDL PEVAKVGSDE WYFFSWRERK YATGWRRNRA SKQGYWKATG KDKPILHPTV 120 AGARKTLVFY SGRAPNGRKT AWVMHEFRLL HHHHHPDPNI QNMQQQEGDD WVLCRVFRKG 180 NNSNGQPLGT SSPPAHHLVE SLISSPAPTI MSDHDRLFTI QLPHHQHSDD EPFFLDDDEQ 240 HQQQLLDLSV LQAPTSFESE QAPGNNGGME INIAEMESFD TTCAALQDAS DYCMQLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-46	20	181	12	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070416	0.0	AK070416.1 Oryza sativa Japonica Group cDNA clone:J023051N16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629924.1	0.0	NAC transcription factor 32
Swissprot	Q84TE6	3e-60	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A0E0CTU5	0.0	A0A0E0CTU5_9ORYZ; Uncharacterized protein
STRING	OMERI03G00420.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16917	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-63	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]