PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G35680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 319aa    MW: 33111.7 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G35680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053115137123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  OMERI02G35680.1 115 YECKTCNKCFPTFQALGGHRASH 137
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-8114137No hitNo description
PfamPF139121.8E-11114139IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097115142IPR007087Zinc finger, C2H2
SMARTSM003550.094115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-8208235No hitNo description
PfamPF139128.8E-13212236IPR007087Zinc finger, C2H2
SMARTSM003550.026213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349213235IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSVEDKHGGV VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP  60
APPPPPAQPP VLAAPAPAPP APAPVVVVKS ERYTSRKYTE AATTADGVRA GFYVYECKTC  120
NKCFPTFQAL GGHRASHKKP RLTGADDDNV NANAIVVKSK PPLTTTTTPS PPSPPPPQAD  180
IAAAAVVVPD VTTVLSLNNV AAAGSMINKL RVHECSICGA EFGSGQALGG HMRRHRPLHA  240
PPERAVTTAA TAAAPDTKKE GSTSINLELD LNLPAPSDEE SVSPPPPPPV LLALGGQFND  300
GKKPILQLTA SAALVGCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039890.0AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040260.0AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623775.11e-150zinc finger protein ZAT5
TrEMBLA0A0E0CTC00.0A0A0E0CTC0_9ORYZ; Uncharacterized protein
STRINGOMERI02G35050.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-25C2H2 family protein