PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G35600.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 325aa    MW: 35308.8 Da    PI: 10.4549
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G35600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1319105186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         st+++f +l+
  OMERI02G35600.1  19 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPELD 105
                      7******************************************99999999********************999886......5899999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-2617107No hitNo description
Gene3DG3DSA:1.10.10.603.8E-42089IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEVREMAVAA AAAAAAEDCW SEGETEALVR AWGSRYVELN RGNLRQKQWQ EVADAVNSRR  60
GAAARRRPPR TDVQCKNRVD TLKKKYKAER ARVMPSTWSF FPELDRLVGP TLSASASKRP  120
SPSPSPVPPP PHFALPVHPS AVRKPPSPSP SPSPPPPMAL PLPSYRRGSP LPAAALIQQE  180
AAAAAAAAVS DSEDSEGPGD NNNHNAQRSP SQSVSSRSGN SNKRSRQEVD GGFRELARAI  240
EAFAEMYERV ESAKQKQALE IERQRIDFLK QLEVKRMENF VDAHVKLARA KRIKKHAGSA  300
PDGIGAAELV SSVAALPFLS TSTYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133330.0AC113333.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1115_B06, complete sequence.
GenBankAK0678620.0AK067862.1 Oryza sativa Japonica Group cDNA clone:J013124K11, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639809.11e-164trihelix transcription factor ASIL2
TrEMBLA0A0E0CTA80.0A0A0E0CTA8_9ORYZ; Uncharacterized protein
STRINGOBART05G25610.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-29sequence-specific DNA binding transcription factors