PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G34900.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 836aa MW: 92586.5 Da PI: 4.9044

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G34900.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	75.4	7.5e-24	646	690	1	45
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv++Lt++h OMERI02G34900.4 646 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKIMKVDSLTIYH 690 79*****************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11107	2.1E-46	1	211	No hit	No description
Pfam	PF11107	1.2E-18	218	347	No hit	No description
SuperFamily	SSF46689	3.4E-10	643	690	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-20	645	690	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-16	646	689	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-5	648	685	IPR001005	SANT/Myb domain
Pfam	PF14379	4.2E-18	728	770	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE 60 SARELDAALV QLTSSPNFPK GIEDIRSKTL ATARELVLKH FLKTTNAENL GAVLQAVVEM 120 DMDGISASGE RSVCQEYVQS ILDMNLPSLM RTKNACDVGY STSSDEFCEE SLFMGNSQIL 180 LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IVDKFILWKQ 240 WKAKCLLYLL DERTIRIMSG TNLIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMELCLLG 300 LVARQWNSLI ESFMSHTFSS FPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ 360 SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAGSKDRPTS TMNQLRNGKV 420 PQYLSPAITV VPALSEVAFP SFSEHRPSYI EREQCGSSIN SFDPSTPMCM LASNFTSDLY 480 INNSESPNGK LSSESYAIDT SGCDSSLPQQ SLYKGNPNSL RMVYPKVSEQ NSWSQEPLPG 540 PFVCPTSVDF FDQQDMAIFD QQIQDNIAAS PRTNLAKQNE WFSSGTSLQY LESSVSAGSV 600 LKAADATSTT PSNYSHCHAQ RNTSNPPNFN ELCSGNIASS NIAPTKPRMR WTPELHERFV 660 DAVNKLGGSE KATPKAVQKI MKVDSLTIYH KYRTVHHRPQ LSDGESAKSG QMDEVSSQPL 720 KGMETTCEGL RVQIGLQKQL HEQLEIQRKL QLQVEEHSKY LAMIIEKQSE SLRQLGALPR 780 SLDAPTQVLD NRETCEGQTG DADSAEQKPE KGMHNLEISE ETPYAGSLAA GSDNQG

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE  60
SARELDAALV QLTSSPNFPK GIEDIRSKTL ATARELVLKH FLKTTNAENL GAVLQAVVEM  120
DMDGISASGE RSVCQEYVQS ILDMNLPSLM RTKNACDVGY STSSDEFCEE SLFMGNSQIL  180
LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IVDKFILWKQ  240
WKAKCLLYLL DERTIRIMSG TNLIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMELCLLG  300
LVARQWNSLI ESFMSHTFSS FPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ  360
SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAGSKDRPTS TMNQLRNGKV  420
PQYLSPAITV VPALSEVAFP SFSEHRPSYI EREQCGSSIN SFDPSTPMCM LASNFTSDLY  480
INNSESPNGK LSSESYAIDT SGCDSSLPQQ SLYKGNPNSL RMVYPKVSEQ NSWSQEPLPG  540
PFVCPTSVDF FDQQDMAIFD QQIQDNIAAS PRTNLAKQNE WFSSGTSLQY LESSVSAGSV  600
LKAADATSTT PSNYSHCHAQ RNTSNPPNFN ELCSGNIASS NIAPTKPRMR WTPELHERFV  660
DAVNKLGGSE KATPKAVQKI MKVDSLTIYH KYRTVHHRPQ LSDGESAKSG QMDEVSSQPL  720
KGMETTCEGL RVQIGLQKQL HEQLEIQRKL QLQVEEHSKY LAMIIEKQSE SLRQLGALPR  780
SLDAPTQVLD NRETCEGQTG DADSAEQKPE KGMHNLEISE ETPYAGSLAA GSDNQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	646	698	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066382	0.0	AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0CT10	0.0	A0A0E0CT10_9ORYZ; Uncharacterized protein
STRING	OMERI02G34190.3	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	3e-40	phosphate starvation response 1