PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G34410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 336aa    MW: 38202.5 Da    PI: 8.2707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G34410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.3e-1696142455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  OMERI02G34410.1  96 VHNLSEKRRRSRINEKMKALQSLIPNS-----SKTDKASMLDDAIEYLKQLQ 142
                      6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-2089153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-2090152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12792141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-1595146No hitNo description
PfamPF000106.5E-1496142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1998147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MECFLGLKKK PSQNQRQRER ETEERWQLLQ QQVLVFAVAM MDGRGSQEEH LDLIMRHHAS  60
MGLDRCESEE ALGSSESEQP TRPARPRGKR SRAAEVHNLS EKRRRSRINE KMKALQSLIP  120
NSSKTDKASM LDDAIEYLKQ LQLQVQMLSM RNGLYVPPVN LSGAPEHLPI PQMSAALDQN  180
SAKASDPSVV LQPVNQISGA HLPFELANQH KPLFLPGVPN ATALEPRFLV ESSRSNLQSL  240
RFTEPTEMIY PDEMMLKHRL TSANESTIVP GTDEKSVRQN TYMMNADRFD RYALSKDQLQ  300
HIMPKNTESV LDMPHLHRLQ TGDTEVRVEG RIKVNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-151CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627242.10.0transcription factor SPATULA isoform X1
RefseqXP_015627243.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0CSS20.0A0A0E0CSS2_9ORYZ; Uncharacterized protein
STRINGOMERI02G33660.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-34bHLH family protein