PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G33910.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 218aa    MW: 23776.7 Da    PI: 8.9477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G33910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1853102255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  OMERI02G33910.1  53 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 102
                      69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-3052110No hitNo description
SMARTSM003804.0E-3853116IPR001471AP2/ERF domain
PfamPF008474.0E-1153101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3453111IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2153111IPR016177DNA-binding domain
PROSITE profilePS5103221.06153110IPR001471AP2/ERF domain
PRINTSPR003673.8E-115465IPR001471AP2/ERF domain
PRINTSPR003673.8E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAPAPHSLPC TWQRAPTSAK CLITAPIAAG EDHPRSRSRH RQAYKLMARP QQRYRGVRQR  60
HWGSWVSEIR HPLLKTRIWL GTFETAEDAA RAYDEAARIM CGPRARTNFP LADATAAAAA  120
AASSSFLSAA LVAKLHRFNL ASVQATQRQR EAAATAAAAS SASAATPLGN AAAAAHDDDA  180
RTTTTYGAEW SGRFLEEQHV EQMIDELLDS NFSMEICY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1754111664ATERF1
3gcc_A4e-1754111664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039750.0AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622684.14e-78ethylene-responsive transcription factor ERF003
SwissprotQ94AW58e-55ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0E0CSK71e-157A0A0E0CSK7_9ORYZ; Uncharacterized protein
STRINGOMERI02G33180.11e-157(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]