PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G33840.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 1075aa    MW: 118781 Da    PI: 7.8075
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G33840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.95.2e-19214257145
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+
  OMERI02G33840.1 214 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTREN 257
                      79*******************.********************987 PP
2Response_reg75.61.8e-25261341109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l + +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ +  
  OMERI02G33840.1  26 VLAVDDDPVCLKVLETLLLRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGITH 117
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  OMERI02G33840.1 118 GACDYLLKPVRIEELRN 134
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.1E-4023156No hitNo description
SuperFamilySSF521725.55E-3423150IPR011006CheY-like superfamily
SMARTSM004483.6E-3024136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.41625140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2226135IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.45E-2627140No hitNo description
SuperFamilySSF466891.33E-11212265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-19212265IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-16214257IPR006447Myb domain, plants
PROSITE profilePS513755.722707741IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.1E-6716759IPR011990Tetratricopeptide-like helical domain
PfamPF138121.9E-4732788IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.87742776IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.169777811IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.1E-6816878IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.101.1E-69151018IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.643918952IPR002885Pentatricopeptide repeat
PfamPF015355.2E-4923949IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.0E-4923953IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.029953983IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MRAVEERKGV VPAARRRDQF PVGMRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL  60
KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC  120
DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NLDFYEECNK PPNADSDHVH GHVTCGSPDQ  180
SGRPSKKRKE YCSEEEDEGE VNTQDIDDPS APKKPRVVWS VELHRKFVAA VNQLGIDKAV  240
PKRILELMNV EKLTRENKYR LYLKRLSAVA SQQVSIVAAL GGRDPFLHMG GFEGLQGYQA  300
FNSSAALSSF TPHGLLNSPR NNPAALGTQG VPASKSIQTM SGSHTLSHPI NDANKYHLSL  360
PGNQKGNLGQ GLATSLGHTQ MQQKWIHEET DDLSTILSGN GLSNGMSGTL QSVSSSPLLP  420
QELAECTQAK IVSQPSIRTS SVSSEHIEGA VRVSSGLLES RVSQQSTIPL SGFSANELLI  480
HGSFNNTCAN KLGGTSSSCA PARSSNDLMV ARDTKGGASS FGGAMLLPPD TEQKYLNFGG  540
GNGLKQKFDD RTADSLFDPK FVWSSVPSSQ LASNIGAHHA MSQRWNNSSS NSSNIGARMI  600
GQATSSGSTV IPQMKTDFLV SSGDMLMPKN TSDLSIPKLQ SELSSSSCSF DGLLNSIVKV  660
ILSWMDSHND FRLSPSDHMV RLELIAKVHG TSQAEEYYRK LSTAASKKAA SFPLLHCYVT  720
ERNVQKAETF MAELQRYGLP VDPHSFNEIM KLYVATCQYE KVLSVIYLMK RNNIPRNVLS  780
YNIWMNACAE VSGLASVQSA FKEMLNDDMV EVGWSTYCTL ANIFKKYGQS SKALACLRTA  840
ETKLSSTGRL GYSFIMTCYA ALNDRDGVIR LWEASKSVPG RIPAANYMTA MVCLIKVGDI  900
GRAEWTFGSW EAESKKHDVR VSNVLLGAYV RNGWIEKAER LHLHMLEKGA HPNYKTWEIL  960
MEGFVQSKQM DKAVNAMKKG LSLLKTCHWR PPLELLEAIA KYFEEQGSVE DADRFIKVLQ  1020
KFNLTSLPLY KSLLGAYINA DIVPQNIPQM IAGDQIDMDE EMDQLIIRAS KIDIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17210267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625496.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A0E0CSK10.0A0A0E0CSK1_9ORYZ; Uncharacterized protein
STRINGOMERI02G33110.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-98response regulator 12