PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G31110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 227aa MW: 24252.3 Da PI: 10.8471 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.5 | 3.6e-28 | 33 | 160 | 5 | 124 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssgkaa 91 d+hsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+ +a + i+ l+++ + +a + +++ ++ a++ ++g+++ OMERI02G31110.1 33 SDKHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDRPSKAIEWLICAAAATIDTLPSLdysfvlsQHRPAPHPPEAEAVERAAFGGAGAHE 126 79***********************************************************999988733333333555666666666666666 PP TCP 92 ksaa.kskksqksaasalnlak.esrakararare 124 + s ++++++ s + + e ak rar re OMERI02G31110.1 127 EGYGgGSGEKRRKTRSWCAARRaERIAKLRAR-RE 160 66664444455555545555553444777777.33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.178 | 32 | 90 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.0E-26 | 33 | 97 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEEVVVGKER KRPHCALVGV GGHGSGVADE LGSDKHSKVV TSRGLRDRRV RLSVPTAIAF 60 YDIQDRLGVD RPSKAIEWLI CAAAATIDTL PSLDYSFVLS QHRPAPHPPE AEAVERAAFG 120 GAGAHEEGYG GGSGEKRRKT RSWCAARRAE RIAKLRARRE GWMPRREAST SAASGGQSWI 180 RKPSTLGSGG SCSCSDAKTA KRRWAEKAGE AVVREAGGAK RGGGGRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 37 | 91 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 37 | 91 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004314 | 1e-174 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. | |||
GenBank | AP014963 | 1e-174 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-174 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0CRH7 | 1e-159 | A0A0E0CRH7_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA06G04550.1 | 5e-72 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19965 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-26 | TCP family protein |