PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI02G29410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 28578.7 Da PI: 8.8506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.1 | 3.7e-19 | 55 | 189 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrk.nratk..sgyWk.atgkdke 91 p f+F+Ptd ++v yL +++ + ++ vi++ d+ ++ePw+L +++ + + fF++ +++ g+rk +ra+k g+W+ ++g+ + OMERI02G29410.1 55 PAFKFDPTDADIVASYLLPRALYGRGHA-AVIQD-DVSRCEPWTLMREHGHAASAHAFFVHDHESVGgGGRRKvQRAVKngGGVWRiQKGEVAT 146 78******************99999777.55655.**********855444444445666655555514444425665545789*955566555 PP NAM 92 vlsk........kgel..vglkktLvfykgrapkgektdWvmheyrl 128 ++ + l v ++ L f+ r+ +++++ Wvmhey++ OMERI02G29410.1 147 LTIVrgggggggE--LdvVYKRRNLSFH--RRGESSSSGWVMHEYEI 189 4444556665433..1559999******..5555679********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-24 | 43 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.333 | 53 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-14 | 55 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MASTSRKRSA RSLQEDDQTS SAAEAPAAVR EDEERVAVAG MEAWRFGFSR FSGFPAFKFD 60 PTDADIVASY LLPRALYGRG HAAVIQDDVS RCEPWTLMRE HGHAASAHAF FVHDHESVGG 120 GGRRKVQRAV KNGGGVWRIQ KGEVATLTIV RGGGGGGGEL DVVYKRRNLS FHRRGESSSS 180 GWVMHEYEIT SPPLPATVLS RIRATPRAKD KKLCIKEEPS CSTSAAGDGD GERSGPIRDH 240 TAAGAGDSAT ANHNNTTSAA TTTMAAAV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616128.1 | 1e-166 | NAC domain-containing protein 89 | ||||
TrEMBL | A0A0E0CQR7 | 0.0 | A0A0E0CQR7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G28660.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14301 | 19 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27300.1 | 2e-09 | NTM1-like 8 |