PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G28370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 305aa MW: 31839.6 Da PI: 7.5278 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky OMERI02G28370.1 144 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 188 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.704 | 10 | 73 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2 | 14 | 75 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.873 | 137 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-17 | 139 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 141 | 191 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.3E-17 | 141 | 191 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.6E-11 | 142 | 187 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.6E-11 | 144 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-9 | 144 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MTSQAATTTT TATAEAAWTK EDDKAFENAL AACAAPPPAD GGAPDDDWFA ALAASVPGAR 60 SVEEVRRHYE ALVEDVAAID AGRVPLPRYA GEESAAPPDG AAAAAASKDG GHRRDERKGG 120 GGGGGYDGGK SCSKAEQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ 180 VASHAQKYFI RLNSMNRDRR RSSIHDITSV TAGDQVAAQQ GAPITGHQAT GNPAAVALGP 240 PGMKHHHHHP GGAPPMPMYG GAPMGHPVAG HMVPAAVGTP VMFPPGHAPY VVPVGYPAPP 300 AKMHQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY151042 | 0.0 | AY151042.1 Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627636.1 | 1e-156 | transcription factor MYBS1 | ||||
Swissprot | B8A9B2 | 1e-157 | MYBS1_ORYSI; Transcription factor MYBS1 | ||||
Swissprot | Q8LH59 | 1e-157 | MYBS1_ORYSJ; Transcription factor MYBS1 | ||||
TrEMBL | A0A0E0CQD1 | 0.0 | A0A0E0CQD1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G27680.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9466 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-48 | MYB family protein |
Publications ? help Back to Top | |||
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